Variant report

Variant	rs6955441
Chromosome Location	chr7:3886813-3886814
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3885725..3887398-chr7:3891256..3893555,2	K562	blood:

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10251426	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10281665	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11975443	1.00[TSI][hapmap]
rs11982305	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16870954	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17133908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55781922	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56269630	1.00[EUR][1000 genomes]
rs57259332	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57670646	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58101419	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58156454	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58436415	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59252575	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60121447	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60288858	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61071172	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61245884	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6951613	0.86[ASW][hapmap];0.81[LWK][hapmap];1.00[MEX][hapmap];0.80[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6956672	1.00[EUR][1000 genomes]
rs6959349	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6961081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6961589	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6961925	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6963033	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6971687	1.00[EUR][1000 genomes]
rs6972032	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6972129	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6972300	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6976456	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73310056	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674314	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs73674331	1.00[EUR][1000 genomes]
rs73674333	1.00[EUR][1000 genomes]
rs73674335	1.00[EUR][1000 genomes]
rs7776637	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7785172	1.00[EUR][1000 genomes]
rs7785202	0.81[AMR][1000 genomes]
rs7785577	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7788262	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7789100	1.00[EUR][1000 genomes]
rs7789566	1.00[EUR][1000 genomes]
rs7792440	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7804583	1.00[EUR][1000 genomes]
rs7806075	1.00[EUR][1000 genomes]
rs7806513	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs985185	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1021443	chr7:3705273-3889334	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1027624	chr7:3808366-3923408	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv538684	chr7:3808366-3923408	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1029406	chr7:3860894-4477095	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv538685	chr7:3860894-4477095	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv1026410	chr7:3869104-4383606	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv887336	chr7:3870810-3934909	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv887337	chr7:3886254-3934909	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3874200-3887800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:3880800-3888600	Weak transcription	Spleen	Spleen
3	chr7:3882200-3894400	Weak transcription	Aorta	Aorta
4	chr7:3886600-3887000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr7:3886600-3894600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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