Variant report

Variant	rs10281665
Chromosome Location	chr7:3875081-3875082
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:3869441..3873485-chr7:3874095..3876939,3	MCF-7	breast:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10251426	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11975443	1.00[TSI][hapmap]
rs11982305	1.00[EUR][1000 genomes]
rs16870954	1.00[EUR][1000 genomes]
rs17133908	1.00[EUR][1000 genomes]
rs55781922	1.00[EUR][1000 genomes]
rs56269630	1.00[EUR][1000 genomes]
rs57259332	1.00[EUR][1000 genomes]
rs57670646	1.00[EUR][1000 genomes]
rs58101419	1.00[EUR][1000 genomes]
rs58156454	1.00[EUR][1000 genomes]
rs58436415	1.00[EUR][1000 genomes]
rs59252575	1.00[EUR][1000 genomes]
rs60121447	1.00[EUR][1000 genomes]
rs60288858	1.00[EUR][1000 genomes]
rs61071172	1.00[EUR][1000 genomes]
rs61245884	1.00[EUR][1000 genomes]
rs6951613	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6955441	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6956672	1.00[EUR][1000 genomes]
rs6959349	1.00[EUR][1000 genomes]
rs6961081	1.00[EUR][1000 genomes]
rs6961589	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6961925	1.00[EUR][1000 genomes]
rs6963033	1.00[EUR][1000 genomes]
rs6971687	1.00[EUR][1000 genomes]
rs6972032	1.00[EUR][1000 genomes]
rs6972129	1.00[EUR][1000 genomes]
rs6972300	1.00[EUR][1000 genomes]
rs6976456	1.00[EUR][1000 genomes]
rs73310056	1.00[EUR][1000 genomes]
rs73674331	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73674333	1.00[EUR][1000 genomes]
rs73674335	1.00[EUR][1000 genomes]
rs7776637	1.00[EUR][1000 genomes]
rs7785172	1.00[EUR][1000 genomes]
rs7788262	1.00[EUR][1000 genomes]
rs7789100	1.00[EUR][1000 genomes]
rs7789566	1.00[EUR][1000 genomes]
rs7792440	1.00[EUR][1000 genomes]
rs7804583	1.00[EUR][1000 genomes]
rs7806075	0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7806513	1.00[ASW][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs985185	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1021443	chr7:3705273-3889334	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1027624	chr7:3808366-3923408	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv538684	chr7:3808366-3923408	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1029406	chr7:3860894-4477095	Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv538685	chr7:3860894-4477095	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1026410	chr7:3869104-4383606	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv887336	chr7:3870810-3934909	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3848400-3882000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:3849400-3880600	Weak transcription	Aorta	Aorta
3	chr7:3861000-3886400	Weak transcription	Pancreas	Pancrea
4	chr7:3873800-3875200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr7:3874200-3887800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:3874600-3875200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr7:3874600-3875200	Enhancers	NHEK	skin

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