Variant report

Variant	rs11980262
Chromosome Location	chr7:140040221-140040222
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11975841	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61024048	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73737574	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73737575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73737576	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140024000-140048800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:140026000-140040800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:140026000-140040800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:140026200-140048600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr7:140026400-140041000	Weak transcription	NHDF-Ad	bronchial
6	chr7:140026400-140041800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr7:140026600-140041000	Weak transcription	Colon Smooth Muscle	Colon
8	chr7:140026600-140051600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr7:140026600-140060600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr7:140029800-140042800	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr7:140032200-140042600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr7:140032800-140043000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr7:140033400-140043200	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr7:140033400-140048400	Strong transcription	HUES64 Cell Line	embryonic stem cell
15	chr7:140033600-140040800	Weak transcription	Esophagus	oesophagus
16	chr7:140033600-140096000	Weak transcription	Stomach Mucosa	stomach
17	chr7:140033800-140040600	Weak transcription	Colonic Mucosa	Colon
18	chr7:140034800-140041200	Weak transcription	Hela-S3	cervix
19	chr7:140034800-140047600	Weak transcription	GM12878-XiMat	blood
20	chr7:140034800-140085600	Weak transcription	Psoas Muscle	Psoas
21	chr7:140035000-140045200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr7:140035000-140052400	Weak transcription	Fetal Kidney	kidney
23	chr7:140035000-140074200	Weak transcription	Right Atrium	heart
24	chr7:140035200-140040800	Weak transcription	Fetal Brain Female	brain
25	chr7:140035200-140041200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr7:140035200-140042600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:140035200-140042600	Weak transcription	Right Ventricle	heart
28	chr7:140035200-140044800	Weak transcription	Brain Angular Gyrus	brain
29	chr7:140035200-140044800	Weak transcription	Brain Cingulate Gyrus	brain
30	chr7:140035200-140048400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
31	chr7:140035200-140058200	Weak transcription	Small Intestine	intestine
32	chr7:140035200-140060600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr7:140035400-140040400	Weak transcription	HSMMtube	muscle
34	chr7:140035400-140040800	Weak transcription	Spleen	Spleen
35	chr7:140035400-140041000	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr7:140035400-140041000	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr7:140035400-140041200	Weak transcription	HMEC	breast
38	chr7:140035400-140042600	Weak transcription	Aorta	Aorta
39	chr7:140035400-140044800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr7:140035400-140048600	Weak transcription	HSMM	muscle
41	chr7:140035600-140047400	Weak transcription	Fetal Heart	heart
42	chr7:140035800-140041000	Weak transcription	Brain Hippocampus Middle	brain
43	chr7:140035800-140045000	Weak transcription	NHEK	skin
44	chr7:140035800-140048600	Weak transcription	Brain Substantia Nigra	brain
45	chr7:140036000-140040600	Weak transcription	Primary B cells from cord blood	blood
46	chr7:140036000-140040800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
47	chr7:140036000-140040800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr7:140036000-140040800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr7:140036000-140040800	Weak transcription	K562	blood
50	chr7:140036000-140041200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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