Variant report

Variant	rs73737574
Chromosome Location	chr7:140036576-140036577
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139875471..139877216-chr7:140034809..140037198,2	K562	blood:
2	chr7:140028491..140031787-chr7:140034312..140037581,4	MCF-7	breast:
3	chr7:140033361..140035282-chr7:140035718..140037370,2	K562	blood:
4	chr7:140029554..140032054-chr7:140034333..140036642,2	K562	blood:
5	chr7:139875155..139876971-chr7:140035698..140038198,2	K562	blood:

Variant related genes	Relation type
ENSG00000260231	Chromatin interaction
ENSG00000006459	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11975841	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11980262	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61024048	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73737575	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73737576	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140024000-140048800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:140026000-140040800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:140026000-140040800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:140026200-140038200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:140026200-140048600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:140026400-140040200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:140026400-140041000	Weak transcription	NHDF-Ad	bronchial
8	chr7:140026400-140041800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr7:140026600-140041000	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:140026600-140051600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr7:140026600-140060600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:140029800-140042800	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr7:140031200-140036600	Strong transcription	Primary T cells from cord blood	blood
14	chr7:140031600-140036800	Strong transcription	Fetal Intestine Small	intestine
15	chr7:140031600-140036800	Strong transcription	Fetal Stomach	stomach
16	chr7:140032200-140037200	Strong transcription	Osteobl	bone
17	chr7:140032200-140042600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr7:140032400-140037200	Strong transcription	Brain Germinal Matrix	brain
19	chr7:140032600-140036600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
20	chr7:140032800-140036600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr7:140032800-140036800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr7:140032800-140043000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr7:140033000-140036600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
24	chr7:140033000-140036600	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr7:140033000-140040200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr7:140033200-140036600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr7:140033200-140037400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr7:140033200-140037400	Strong transcription	Primary monocytes fromperipheralblood	blood
29	chr7:140033400-140036600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr7:140033400-140036800	Strong transcription	Fetal Thymus	thymus
31	chr7:140033400-140037600	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr7:140033400-140043200	Strong transcription	HUES6 Cell Line	embryonic stem cell
33	chr7:140033400-140048400	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr7:140033600-140036600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:140033600-140036600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr7:140033600-140037400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr7:140033600-140037600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr7:140033600-140040800	Weak transcription	Esophagus	oesophagus
39	chr7:140033600-140096000	Weak transcription	Stomach Mucosa	stomach
40	chr7:140033800-140036600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr7:140033800-140036600	Strong transcription	Primary hematopoietic stem cells	blood
42	chr7:140033800-140036800	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr7:140033800-140036800	Strong transcription	Placenta Amnion	Placenta Amnion
44	chr7:140033800-140040600	Weak transcription	Colonic Mucosa	Colon
45	chr7:140034000-140036600	Strong transcription	Liver	Liver
46	chr7:140034000-140036600	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr7:140034000-140036600	Strong transcription	Fetal Lung	lung
48	chr7:140034000-140036800	Strong transcription	Sigmoid Colon	Sigmoid Colon
49	chr7:140034000-140038200	Strong transcription	Dnd41	blood
50	chr7:140034200-140036800	Strong transcription	Skeletal Muscle Male	skeletal muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links