Variant report

Variant	rs73737575
Chromosome Location	chr7:140037162-140037163
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:139875471..139877216-chr7:140034809..140037198,2	K562	blood:
2	chr7:140028491..140031787-chr7:140034312..140037581,4	MCF-7	breast:
3	chr7:140033361..140035282-chr7:140035718..140037370,2	K562	blood:
4	chr7:139875155..139876971-chr7:140035698..140038198,2	K562	blood:

Variant related genes	Relation type
ENSG00000260231	Chromatin interaction
ENSG00000006459	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11975841	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11980262	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61024048	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73737574	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73737576	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026255	chr7:139944473-140043299	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140024000-140048800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr7:140026000-140040800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr7:140026000-140040800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr7:140026200-140038200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr7:140026200-140048600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr7:140026400-140040200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:140026400-140041000	Weak transcription	NHDF-Ad	bronchial
8	chr7:140026400-140041800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr7:140026600-140041000	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:140026600-140051600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr7:140026600-140060600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr7:140029800-140042800	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr7:140032200-140037200	Strong transcription	Osteobl	bone
14	chr7:140032200-140042600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr7:140032400-140037200	Strong transcription	Brain Germinal Matrix	brain
16	chr7:140032800-140043000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr7:140033000-140040200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr7:140033200-140037400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr7:140033200-140037400	Strong transcription	Primary monocytes fromperipheralblood	blood
20	chr7:140033400-140037600	Strong transcription	HUES48 Cell Line	embryonic stem cell
21	chr7:140033400-140043200	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr7:140033400-140048400	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr7:140033600-140037400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr7:140033600-140037600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr7:140033600-140040800	Weak transcription	Esophagus	oesophagus
26	chr7:140033600-140096000	Weak transcription	Stomach Mucosa	stomach
27	chr7:140033800-140040600	Weak transcription	Colonic Mucosa	Colon
28	chr7:140034000-140038200	Strong transcription	Dnd41	blood
29	chr7:140034800-140041200	Weak transcription	Hela-S3	cervix
30	chr7:140034800-140047600	Weak transcription	GM12878-XiMat	blood
31	chr7:140034800-140085600	Weak transcription	Psoas Muscle	Psoas
32	chr7:140035000-140040000	Weak transcription	Fetal Brain Male	brain
33	chr7:140035000-140040200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr7:140035000-140045200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr7:140035000-140052400	Weak transcription	Fetal Kidney	kidney
36	chr7:140035000-140074200	Weak transcription	Right Atrium	heart
37	chr7:140035200-140040800	Weak transcription	Fetal Brain Female	brain
38	chr7:140035200-140041200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr7:140035200-140042600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr7:140035200-140042600	Weak transcription	Right Ventricle	heart
41	chr7:140035200-140044800	Weak transcription	Brain Angular Gyrus	brain
42	chr7:140035200-140044800	Weak transcription	Brain Cingulate Gyrus	brain
43	chr7:140035200-140048400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr7:140035200-140058200	Weak transcription	Small Intestine	intestine
45	chr7:140035200-140060600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr7:140035400-140040400	Weak transcription	HSMMtube	muscle
47	chr7:140035400-140040800	Weak transcription	Spleen	Spleen
48	chr7:140035400-140041000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr7:140035400-140041000	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr7:140035400-140041200	Weak transcription	HMEC	breast

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