Variant report

Variant	rs11982858
Chromosome Location	chr7:105568350-105568351
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105566150..105568635-chr7:105572225..105574971,2	MCF-7	breast:
2	chr7:105566513..105568956-chr7:105691753..105693401,2	MCF-7	breast:
3	chr7:105561293..105564249-chr7:105567027..105569225,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10229490	1.00[EUR][1000 genomes]
rs2392640	1.00[EUR][1000 genomes]
rs2392641	1.00[EUR][1000 genomes]
rs35803078	1.00[AMR][1000 genomes]
rs57826286	1.00[EUR][1000 genomes]
rs73717271	1.00[AMR][1000 genomes]
rs73717289	1.00[EUR][1000 genomes]
rs73718051	1.00[EUR][1000 genomes]
rs73718054	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73718055	1.00[AMR][1000 genomes]
rs7809133	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	esv3435895	chr7:105564407-105908056	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105547000-105577800	Weak transcription	Gastric	stomach
2	chr7:105547400-105573400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr7:105548400-105572400	Weak transcription	Rectal Smooth Muscle	rectum
4	chr7:105550000-105572800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr7:105551400-105572800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr7:105551800-105573400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr7:105551800-105573400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr7:105551800-105573600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr7:105551800-105580600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr7:105552000-105573200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
11	chr7:105557600-105572600	Weak transcription	NHLF	lung
12	chr7:105561600-105575200	Weak transcription	HepG2	liver
13	chr7:105563200-105573600	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr7:105564200-105572400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr7:105564600-105571400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr7:105564600-105574600	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:105564800-105572800	Weak transcription	Fetal Stomach	stomach
18	chr7:105564800-105575000	Weak transcription	Duodenum Mucosa	Duodenum
19	chr7:105565000-105572800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr7:105565200-105572600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr7:105565200-105575200	Weak transcription	Liver	Liver
22	chr7:105565200-105575400	Weak transcription	Fetal Intestine Large	intestine
23	chr7:105565400-105574000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr7:105565600-105572400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr7:105565600-105572600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:105566000-105577400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr7:105566000-105586400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr7:105566600-105573000	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr7:105567000-105568600	Strong transcription	Stomach Smooth Muscle	stomach
30	chr7:105567000-105570400	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr7:105567000-105571400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr7:105567000-105572400	Weak transcription	Adipose Nuclei	Adipose
33	chr7:105567200-105569000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr7:105567200-105571400	Weak transcription	NHDF-Ad	bronchial
35	chr7:105567200-105575200	Weak transcription	Primary T cells from cord blood	blood
36	chr7:105567400-105574200	Weak transcription	Aorta	Aorta
37	chr7:105567400-105574800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr7:105567400-105575200	Weak transcription	Pancreas	Pancrea
39	chr7:105567400-105575400	Weak transcription	Fetal Intestine Small	intestine
40	chr7:105567600-105572800	Weak transcription	Brain Hippocampus Middle	brain
41	chr7:105567800-105570400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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