Variant report

Variant	rs73718054
Chromosome Location	chr7:105573493-105573494
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:105526646..105528203-chr7:105571811..105574702,2	MCF-7	breast:
2	chr7:105573338..105574980-chr7:105579109..105580848,2	MCF-7	breast:
3	chr7:105566150..105568635-chr7:105572225..105574971,2	MCF-7	breast:
4	chr7:105572366..105575120-chr7:105681796..105683797,2	MCF-7	breast:
5	chr6:26156554..26158988-chr7:105571670..105574632,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RINT1-4	chr7:105573258-105575057	NONHSAT122636

No data

Variant related genes	Relation type
ENSG00000168298	Chromatin interaction
ENSG00000158373	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10229490	1.00[EUR][1000 genomes]
rs11982858	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2392640	1.00[EUR][1000 genomes]
rs2392641	1.00[EUR][1000 genomes]
rs35803078	1.00[AMR][1000 genomes]
rs57826286	1.00[EUR][1000 genomes]
rs73717271	1.00[AMR][1000 genomes]
rs73717289	1.00[EUR][1000 genomes]
rs73718051	1.00[EUR][1000 genomes]
rs73718055	1.00[AMR][1000 genomes]
rs7809133	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
2	esv3435895	chr7:105564407-105908056	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105547000-105577800	Weak transcription	Gastric	stomach
2	chr7:105551800-105573600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr7:105551800-105580600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:105561600-105575200	Weak transcription	HepG2	liver
5	chr7:105563200-105573600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr7:105564600-105574600	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr7:105564800-105575000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:105565200-105575200	Weak transcription	Liver	Liver
9	chr7:105565200-105575400	Weak transcription	Fetal Intestine Large	intestine
10	chr7:105565400-105574000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr7:105566000-105577400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr7:105566000-105586400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr7:105567200-105575200	Weak transcription	Primary T cells from cord blood	blood
14	chr7:105567400-105574200	Weak transcription	Aorta	Aorta
15	chr7:105567400-105574800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:105567400-105575200	Weak transcription	Pancreas	Pancrea
17	chr7:105567400-105575400	Weak transcription	Fetal Intestine Small	intestine
18	chr7:105571400-105576600	Enhancers	NHDF-Ad	bronchial
19	chr7:105571800-105574400	Enhancers	Fetal Brain Female	brain
20	chr7:105572400-105574200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr7:105572400-105574200	Enhancers	Adipose Nuclei	Adipose
22	chr7:105572400-105574400	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr7:105572400-105574400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr7:105572400-105575400	Enhancers	Rectal Smooth Muscle	rectum
25	chr7:105572400-105575600	Enhancers	Osteobl	bone
26	chr7:105572600-105573800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr7:105572600-105574400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr7:105572600-105574400	Enhancers	HSMM	muscle
29	chr7:105572600-105574600	Enhancers	Muscle Satellite Cultured Cells	--
30	chr7:105572600-105574600	Enhancers	NHLF	lung
31	chr7:105572600-105575600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr7:105572600-105575600	Enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr7:105572600-105576600	Enhancers	Stomach Smooth Muscle	stomach
34	chr7:105572800-105573800	Enhancers	Brain Substantia Nigra	brain
35	chr7:105572800-105574000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr7:105572800-105574000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr7:105572800-105574000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr7:105572800-105574000	Enhancers	Brain Hippocampus Middle	brain
39	chr7:105572800-105574000	Enhancers	NH-A	brain
40	chr7:105572800-105574200	Enhancers	Fetal Muscle Leg	muscle
41	chr7:105572800-105574200	Enhancers	Fetal Stomach	stomach
42	chr7:105572800-105574400	Enhancers	HMEC	breast
43	chr7:105572800-105576200	Enhancers	Colon Smooth Muscle	Colon
44	chr7:105573000-105573600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr7:105573000-105573600	Enhancers	Primary hematopoietic stem cells short term culture	blood
46	chr7:105573000-105573600	Weak transcription	Brain Anterior Caudate	brain
47	chr7:105573000-105573800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr7:105573000-105573800	Enhancers	Brain Cingulate Gyrus	brain
49	chr7:105573000-105574200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr7:105573000-105574400	Enhancers	HSMMtube	muscle

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