Variant report

Variant	rs73718051
Chromosome Location	chr7:105563634-105563635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:105561293..105564249-chr7:105567027..105569225,2	K562	blood:
2	chr7:105554708..105557251-chr7:105562901..105564706,2	K562	blood:
3	chr7:105515666..105517802-chr7:105563512..105565045,2	K562	blood:
4	chr7:105558664..105561130-chr7:105562357..105564499,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CDHR3-1	chr7:105563408-105563655	NONHSAT122633

Variant related genes	Relation type
ENSG00000128536	Chromatin interaction
ENSG00000146776	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10229490	1.00[EUR][1000 genomes]
rs11982858	1.00[EUR][1000 genomes]
rs2392640	1.00[EUR][1000 genomes]
rs2392641	1.00[EUR][1000 genomes]
rs57826286	1.00[EUR][1000 genomes]
rs73717289	1.00[EUR][1000 genomes]
rs73718054	1.00[EUR][1000 genomes]
rs7809133	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027213	chr7:105438610-106022869	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:105535800-105564800	Weak transcription	Ovary	ovary
2	chr7:105535800-105566600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:105538800-105564200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr7:105547000-105577800	Weak transcription	Gastric	stomach
5	chr7:105547400-105573400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr7:105548000-105566600	Weak transcription	Colon Smooth Muscle	Colon
7	chr7:105548000-105567200	Weak transcription	Pancreas	Pancrea
8	chr7:105548400-105572400	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:105550000-105572800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr7:105551000-105564000	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr7:105551400-105563800	Weak transcription	Fetal Stomach	stomach
12	chr7:105551400-105572800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr7:105551600-105564000	Weak transcription	Fetal Muscle Trunk	muscle
14	chr7:105551800-105563800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr7:105551800-105564000	Weak transcription	Duodenum Mucosa	Duodenum
16	chr7:105551800-105564200	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr7:105551800-105573400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr7:105551800-105573400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr7:105551800-105573600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr7:105551800-105580600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr7:105552000-105564600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr7:105552000-105573200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr7:105553000-105565200	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr7:105553200-105565800	Weak transcription	Adipose Nuclei	Adipose
25	chr7:105557600-105565000	Strong transcription	NHDF-Ad	bronchial
26	chr7:105557600-105572600	Weak transcription	NHLF	lung
27	chr7:105559200-105566200	Weak transcription	Fetal Heart	heart
28	chr7:105559600-105565400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr7:105559800-105564000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr7:105560400-105564600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr7:105560600-105564800	Weak transcription	Primary T cells from cord blood	blood
32	chr7:105561400-105564800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr7:105561400-105565400	Strong transcription	Stomach Smooth Muscle	stomach
34	chr7:105561600-105563800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr7:105561600-105565400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr7:105561600-105575200	Weak transcription	HepG2	liver
37	chr7:105562200-105564000	Strong transcription	Fetal Intestine Large	intestine
38	chr7:105562400-105564200	Strong transcription	Liver	Liver
39	chr7:105562600-105564200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr7:105562600-105564600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
41	chr7:105563000-105564200	Strong transcription	Cortex derived primary cultured neurospheres	brain
42	chr7:105563000-105564400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr7:105563200-105564200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr7:105563200-105564400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr7:105563200-105573600	Weak transcription	H1 Cell Line	embryonic stem cell
46	chr7:105563400-105564200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr7:105563600-105564400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr7:105563600-105564800	ZNF genes & repeats	Fetal Intestine Small	intestine
49	chr7:105563600-105565400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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