Variant report

Variant	rs11982959
Chromosome Location	chr7:26059739-26059740
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1016913	0.81[CEU][hapmap]
rs10233157	0.88[JPT][hapmap]
rs10248802	0.82[JPT][hapmap]
rs10272549	0.81[GIH][hapmap]
rs10277780	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs11979731	1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.90[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17153037	0.89[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17153054	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17153121	0.99[ASN][1000 genomes]
rs17153130	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17153134	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2391222	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34588727	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55769143	0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56003980	0.98[ASN][1000 genomes]
rs56350402	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57064380	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57114125	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57174018	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58419772	0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58551066	0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66525757	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6944128	0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73091656	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73281416	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7786013	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7805918	0.84[CHB][hapmap];1.00[JPT][hapmap]
rs7808128	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs882611	0.86[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
4	nsv887848	chr7:26000137-26059739	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv470188	chr7:26013958-26075094	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv464412	chr7:26013959-26073411	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv606434	chr7:26013959-26073411	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv1019804	chr7:26057723-26214280	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26054400-26061200	Weak transcription	H1 Cell Line	embryonic stem cell

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