Variant report

Variant	rs73281416
Chromosome Location	chr7:26099111-26099112
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr7:26099083-26099298	HepG2	liver:	n/a	chr7:26099143-26099151 chr7:26099141-26099153 chr7:26099141-26099152 chr7:26099142-26099151 chr7:26099144-26099151 chr7:26099142-26099152 chr7:26099143-26099152
2	JUND	chr7:26099014-26099259	K562	blood:	n/a	chr7:26099143-26099151 chr7:26099141-26099153 chr7:26099141-26099152 chr7:26099142-26099151 chr7:26099144-26099151 chr7:26099142-26099152 chr7:26099143-26099152

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26096714..26102069-chr7:26240159..26243560,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266430	TF binding region
ENSG00000122566	Chromatin interaction
ENSG00000122565	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10272549	0.94[EUR][1000 genomes]
rs10277780	0.81[ASN][1000 genomes]
rs11979731	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11982959	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17153037	0.91[ASN][1000 genomes]
rs17153054	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17153121	0.94[ASN][1000 genomes]
rs17153130	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17153134	0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2391222	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28611070	0.81[ASN][1000 genomes]
rs34588727	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55769143	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56003980	0.91[ASN][1000 genomes]
rs56350402	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57064380	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs57114125	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57174018	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58419772	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs58551066	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6461912	0.81[ASN][1000 genomes]
rs66525757	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6944128	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6954094	0.81[ASN][1000 genomes]
rs73091656	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7786013	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7790015	0.81[ASN][1000 genomes]
rs7805918	0.80[ASN][1000 genomes]
rs7808128	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
4	nsv1019804	chr7:26057723-26214280	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv1021455	chr7:26061848-26113797	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv1024345	chr7:26063806-26132278	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
7	nsv1015432	chr7:26069740-26126619	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv887849	chr7:26075094-26234302	Enhancers Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
9	nsv1024986	chr7:26079829-26128758	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
10	nsv1026480	chr7:26090236-26128758	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
11	nsv1031125	chr7:26090236-26145401	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
12	nsv1032005	chr7:26096504-26127670	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26091600-26099800	Weak transcription	Gastric	stomach
2	chr7:26097000-26100200	Weak transcription	Pancreas	Pancrea
3	chr7:26098200-26101200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr7:26098600-26100200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr7:26098800-26100000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links