Variant report

Variant	rs17153054
Chromosome Location	chr7:26051665-26051666
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26034062..26036742-chr7:26049058..26051711,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11979731	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11982959	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17153037	0.94[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs17153121	0.95[ASN][1000 genomes]
rs17153130	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17153134	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2391222	0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34588727	0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55769143	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56003980	0.82[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs56350402	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57064380	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57114125	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57174018	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58419772	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58551066	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66525757	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6944128	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73091656	0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73281416	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7786013	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7808128	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016813	chr7:25405859-26150509	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
2	nsv538803	chr7:25405859-26150509	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	108 gene(s)	inside rSNPs	diseases
3	nsv606432	chr7:25988185-26223294	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	102 gene(s)	inside rSNPs	diseases
4	nsv887848	chr7:26000137-26059739	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv470188	chr7:26013958-26075094	Enhancers ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv464412	chr7:26013959-26073411	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv606434	chr7:26013959-26073411	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26047600-26052000	Weak transcription	Gastric	stomach
2	chr7:26048600-26052000	Weak transcription	Pancreas	Pancrea
3	chr7:26048800-26051800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
4	chr7:26050600-26051800	Bivalent Enhancer	Primary B cells from peripheral blood	blood
5	chr7:26051000-26052800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr7:26051400-26053600	Enhancers	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links