Variant report

Variant	rs11985193
Chromosome Location	chr8:119477189-119477190
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10090978	0.85[EUR][1000 genomes]
rs10095856	0.97[EUR][1000 genomes]
rs10104899	0.97[EUR][1000 genomes]
rs16891049	0.97[EUR][1000 genomes]
rs28415419	0.97[EUR][1000 genomes]
rs55666480	0.90[EUR][1000 genomes]
rs73313438	0.97[EUR][1000 genomes]
rs73313463	0.97[EUR][1000 genomes]
rs7827972	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119462600-119485000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr8:119475600-119480600	Weak transcription	Lung	lung
3	chr8:119476200-119477400	Weak transcription	Brain Angular Gyrus	brain
4	chr8:119476200-119477800	Weak transcription	Aorta	Aorta
5	chr8:119476200-119480400	Weak transcription	Adipose Nuclei	Adipose
6	chr8:119476200-119480400	Weak transcription	Psoas Muscle	Psoas
7	chr8:119476200-119484600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:119476400-119477200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:119476600-119478000	Enhancers	Brain Hippocampus Middle	brain
10	chr8:119476800-119477400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr8:119476800-119477400	Enhancers	Osteobl	bone
12	chr8:119476800-119480400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr8:119476800-119484600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:119476800-119485200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr8:119477000-119477400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links