Variant report

Variant	rs73313438
Chromosome Location	chr8:119456275-119456276
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119453959..119456833-chr8:119457362..119459167,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10090978	0.83[EUR][1000 genomes]
rs10095856	0.94[EUR][1000 genomes]
rs10104899	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11985193	0.97[EUR][1000 genomes]
rs16891049	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891069	1.00[ASN][1000 genomes]
rs16891083	0.85[ASN][1000 genomes]
rs16891084	0.85[ASN][1000 genomes]
rs28415419	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4074502	0.85[ASN][1000 genomes]
rs4077318	0.85[ASN][1000 genomes]
rs4301473	1.00[ASN][1000 genomes]
rs55666480	0.87[EUR][1000 genomes]
rs57009141	0.85[ASN][1000 genomes]
rs60628700	0.85[ASN][1000 genomes]
rs60663612	0.85[ASN][1000 genomes]
rs7014801	1.00[ASN][1000 genomes]
rs73313459	1.00[ASN][1000 genomes]
rs73313463	0.94[EUR][1000 genomes]
rs73313477	1.00[ASN][1000 genomes]
rs73313478	1.00[ASN][1000 genomes]
rs73313481	1.00[ASN][1000 genomes]
rs73313486	1.00[ASN][1000 genomes]
rs73313487	1.00[ASN][1000 genomes]
rs73315377	0.85[ASN][1000 genomes]
rs73315379	0.85[ASN][1000 genomes]
rs73315381	0.85[ASN][1000 genomes]
rs73315386	0.85[ASN][1000 genomes]
rs7813628	1.00[ASN][1000 genomes]
rs7827972	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7828344	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv612047	chr8:118939094-119468609	Flanking Active TSS Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119449200-119475400	Weak transcription	Gastric	stomach
2	chr8:119451600-119456400	Weak transcription	GM12878-XiMat	blood
3	chr8:119452800-119456400	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr8:119453200-119462400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr8:119454600-119456600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:119455200-119457400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:119455400-119456400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:119455600-119457600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr8:119455800-119456400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr8:119455800-119456400	Enhancers	Ovary	ovary
11	chr8:119455800-119456400	Enhancers	HSMMtube	muscle
12	chr8:119455800-119456800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:119455800-119456800	Enhancers	NHDF-Ad	bronchial
14	chr8:119455800-119457200	Enhancers	Muscle Satellite Cultured Cells	--
15	chr8:119455800-119457400	Enhancers	Adipose Nuclei	Adipose
16	chr8:119455800-119457400	Enhancers	Fetal Heart	heart
17	chr8:119455800-119457400	Enhancers	NH-A	brain
18	chr8:119455800-119457400	Enhancers	Osteobl	bone
19	chr8:119455800-119457600	Enhancers	Hela-S3	cervix
20	chr8:119456000-119456400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr8:119456000-119456400	Enhancers	H9 Cell Line	embryonic stem cell
22	chr8:119456000-119456400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:119456000-119456400	Enhancers	Right Atrium	heart
24	chr8:119456000-119456400	Enhancers	Spleen	Spleen
25	chr8:119456000-119456600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr8:119456000-119456600	Enhancers	NHLF	lung
27	chr8:119456000-119456800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
28	chr8:119456000-119456800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr8:119456000-119456800	Enhancers	iPS-20b Cell Line	embryonic stem cell
30	chr8:119456000-119456800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr8:119456000-119456800	Enhancers	Aorta	Aorta
32	chr8:119456000-119457400	Enhancers	HUES6 Cell Line	embryonic stem cell
33	chr8:119456000-119457400	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr8:119456200-119456400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr8:119456200-119456800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr8:119456200-119456800	Enhancers	A549	lung
37	chr8:119456200-119456800	Flanking Active TSS	HUVEC	blood vessel
38	chr8:119456200-119457400	Enhancers	Fetal Lung	lung

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