Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10104506	1.00[CHB][hapmap]
rs10104899	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16891049	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16891083	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16891084	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs28415419	1.00[ASN][1000 genomes]
rs4074502	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4077318	0.85[ASN][1000 genomes]
rs4301473	1.00[ASN][1000 genomes]
rs57009141	0.85[ASN][1000 genomes]
rs60628700	0.85[ASN][1000 genomes]
rs60663612	0.85[ASN][1000 genomes]
rs7014801	1.00[ASN][1000 genomes]
rs73313438	1.00[ASN][1000 genomes]
rs73313459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313477	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73313478	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73313481	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313486	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313487	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315377	0.85[ASN][1000 genomes]
rs73315379	0.85[ASN][1000 genomes]
rs73315381	0.85[ASN][1000 genomes]
rs73315386	0.85[ASN][1000 genomes]
rs7813628	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7827972	0.93[ASN][1000 genomes]
rs7828344	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119449200-119475400	Weak transcription	Gastric	stomach
2	chr8:119462600-119476000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:119462600-119485000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr8:119467400-119470000	Weak transcription	Left Ventricle	heart
5	chr8:119467400-119475600	Weak transcription	Esophagus	oesophagus
6	chr8:119467400-119476000	Weak transcription	Aorta	Aorta
7	chr8:119469000-119470400	Enhancers	Brain Substantia Nigra	brain
8	chr8:119469200-119470600	Weak transcription	Brain Angular Gyrus	brain
9	chr8:119469400-119470600	Enhancers	Brain Hippocampus Middle	brain
10	chr8:119469400-119471000	Enhancers	Fetal Heart	heart
11	chr8:119469600-119470000	Weak transcription	NHDF-Ad	bronchial

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