Variant report

Variant	rs60628700
Chromosome Location	chr8:119486014-119486015
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10104506	0.93[ASN][1000 genomes]
rs10104899	0.85[ASN][1000 genomes]
rs16891049	0.85[ASN][1000 genomes]
rs16891069	0.85[ASN][1000 genomes]
rs16891083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28415419	0.85[ASN][1000 genomes]
rs4074502	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4077318	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301473	0.85[ASN][1000 genomes]
rs56944321	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57009141	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60663612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014801	0.85[ASN][1000 genomes]
rs73313438	0.85[ASN][1000 genomes]
rs73313459	0.85[ASN][1000 genomes]
rs73313477	0.85[ASN][1000 genomes]
rs73313478	0.85[ASN][1000 genomes]
rs73313481	0.85[ASN][1000 genomes]
rs73313486	0.85[ASN][1000 genomes]
rs73313487	0.85[ASN][1000 genomes]
rs73313490	0.93[ASN][1000 genomes]
rs73315377	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315386	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7813628	0.85[ASN][1000 genomes]
rs7828344	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119480800-119488400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:119481600-119488000	Weak transcription	Brain Substantia Nigra	brain
3	chr8:119485200-119486200	Enhancers	Brain Angular Gyrus	brain
4	chr8:119485200-119486200	Enhancers	Fetal Lung	lung
5	chr8:119485400-119488400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr8:119485600-119488200	Weak transcription	Brain Hippocampus Middle	brain
7	chr8:119485600-119488200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr8:119486000-119488400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links