Variant report

Variant	rs10104506
Chromosome Location	chr8:119480896-119480897
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10095856	0.86[CEU][hapmap];0.89[MEX][hapmap];0.92[TSI][hapmap]
rs10104899	0.86[CEU][hapmap];1.00[CHB][hapmap]
rs16891049	0.85[CEU][hapmap];1.00[CHB][hapmap]
rs16891069	1.00[CHB][hapmap]
rs16891083	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs16891084	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs4074502	1.00[CHB][hapmap];0.93[ASN][1000 genomes]
rs4077318	0.93[ASN][1000 genomes]
rs56944321	0.86[ASN][1000 genomes]
rs57009141	0.93[ASN][1000 genomes]
rs60628700	0.93[ASN][1000 genomes]
rs60663612	0.93[ASN][1000 genomes]
rs73313490	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315377	0.93[ASN][1000 genomes]
rs73315379	0.93[ASN][1000 genomes]
rs73315381	0.93[ASN][1000 genomes]
rs73315386	0.93[ASN][1000 genomes]
rs7827972	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119462600-119485000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr8:119476200-119484600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:119476800-119484600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:119476800-119485200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:119477600-119484800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr8:119478000-119481200	Weak transcription	Brain Hippocampus Middle	brain
7	chr8:119478200-119481200	Weak transcription	Brain Substantia Nigra	brain
8	chr8:119478400-119481200	Weak transcription	Brain Angular Gyrus	brain
9	chr8:119479000-119481600	Enhancers	Liver	Liver
10	chr8:119479800-119481600	Enhancers	Fetal Heart	heart
11	chr8:119480000-119481000	Weak transcription	Thymus	Thymus
12	chr8:119480000-119481600	Enhancers	Right Atrium	heart
13	chr8:119480400-119481200	Enhancers	GM12878-XiMat	blood
14	chr8:119480400-119481400	Enhancers	Brain Germinal Matrix	brain
15	chr8:119480400-119481600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:119480400-119481600	Enhancers	Adipose Nuclei	Adipose
17	chr8:119480400-119481600	Enhancers	Duodenum Mucosa	Duodenum
18	chr8:119480600-119481000	Weak transcription	Psoas Muscle	Psoas
19	chr8:119480600-119481400	Enhancers	Lung	lung
20	chr8:119480800-119481400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr8:119480800-119481600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr8:119480800-119481600	Enhancers	Fetal Lung	lung
23	chr8:119480800-119488400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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