Variant report

Variant	rs4077318
Chromosome Location	chr8:119484712-119484713
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10104506	0.93[ASN][1000 genomes]
rs10104899	0.85[ASN][1000 genomes]
rs16891049	0.85[ASN][1000 genomes]
rs16891069	0.85[ASN][1000 genomes]
rs16891083	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891084	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28415419	0.85[ASN][1000 genomes]
rs4074502	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4301473	0.85[ASN][1000 genomes]
rs56944321	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57009141	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60628700	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60663612	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7014801	0.85[ASN][1000 genomes]
rs73313438	0.85[ASN][1000 genomes]
rs73313459	0.85[ASN][1000 genomes]
rs73313477	0.85[ASN][1000 genomes]
rs73313478	0.85[ASN][1000 genomes]
rs73313481	0.85[ASN][1000 genomes]
rs73313486	0.85[ASN][1000 genomes]
rs73313487	0.85[ASN][1000 genomes]
rs73313490	0.93[ASN][1000 genomes]
rs73315377	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315379	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315381	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315386	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7813628	0.85[ASN][1000 genomes]
rs7828344	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119462600-119485000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr8:119476800-119485200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr8:119477600-119484800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:119480800-119488400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:119481200-119485800	Weak transcription	GM12878-XiMat	blood
6	chr8:119481400-119485200	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr8:119481400-119485200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr8:119481400-119485200	Weak transcription	Lung	lung
9	chr8:119481600-119485000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:119481600-119485200	Weak transcription	Brain Angular Gyrus	brain
11	chr8:119481600-119485200	Weak transcription	Brain Hippocampus Middle	brain
12	chr8:119481600-119485200	Weak transcription	Fetal Lung	lung
13	chr8:119481600-119485200	Weak transcription	Right Atrium	heart
14	chr8:119481600-119485600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr8:119481600-119488000	Weak transcription	Brain Substantia Nigra	brain
16	chr8:119484000-119485000	Weak transcription	Hela-S3	cervix
17	chr8:119484600-119485000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:119484600-119485400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr8:119484600-119486000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr8:119484600-119486000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:119484600-119486000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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