Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10104899	1.00[ASN][1000 genomes]
rs16891049	1.00[ASN][1000 genomes]
rs16891069	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891083	0.85[ASN][1000 genomes]
rs16891084	0.85[ASN][1000 genomes]
rs28415419	1.00[ASN][1000 genomes]
rs4074502	0.85[ASN][1000 genomes]
rs4077318	0.85[ASN][1000 genomes]
rs4301473	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57009141	0.85[ASN][1000 genomes]
rs60628700	0.85[ASN][1000 genomes]
rs60663612	0.85[ASN][1000 genomes]
rs7014801	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73313438	1.00[ASN][1000 genomes]
rs73313459	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313477	1.00[ASN][1000 genomes]
rs73313478	1.00[ASN][1000 genomes]
rs73313481	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313486	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313487	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73315377	0.85[ASN][1000 genomes]
rs73315379	0.85[ASN][1000 genomes]
rs73315381	0.85[ASN][1000 genomes]
rs73315386	0.85[ASN][1000 genomes]
rs7827972	0.93[ASN][1000 genomes]
rs7828344	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119462600-119485000	Weak transcription	Brain Cingulate Gyrus	brain
2	chr8:119475400-119476800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr8:119475600-119476800	Enhancers	NHDF-Ad	bronchial
4	chr8:119475600-119477000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:119475600-119480600	Weak transcription	Lung	lung
6	chr8:119475800-119476800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr8:119476000-119476800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr8:119476200-119477000	Enhancers	HSMMtube	muscle
9	chr8:119476200-119477400	Weak transcription	Brain Angular Gyrus	brain
10	chr8:119476200-119477800	Weak transcription	Aorta	Aorta
11	chr8:119476200-119480400	Weak transcription	Adipose Nuclei	Adipose
12	chr8:119476200-119480400	Weak transcription	Psoas Muscle	Psoas
13	chr8:119476200-119484600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:119476400-119476800	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr8:119476400-119476800	Enhancers	HSMM	muscle
16	chr8:119476400-119477200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:119476600-119476800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:119476600-119476800	Flanking Active TSS	Osteobl	bone
19	chr8:119476600-119478000	Enhancers	Brain Hippocampus Middle	brain

Quick Search: