Variant report

Variant	rs10090978
Chromosome Location	chr8:119468827-119468828
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10095856	0.93[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104899	0.93[CEU][hapmap];0.83[EUR][1000 genomes]
rs10505340	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10505341	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11985193	0.85[EUR][1000 genomes]
rs16891049	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs16891301	1.00[ASN][1000 genomes]
rs16891323	1.00[ASN][1000 genomes]
rs17682473	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17749697	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2030454	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2514593	1.00[JPT][hapmap]
rs28415419	0.83[EUR][1000 genomes]
rs41423651	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4512404	1.00[JPT][hapmap]
rs4641102	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs55666480	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56206420	1.00[ASN][1000 genomes]
rs56234774	1.00[ASN][1000 genomes]
rs56707073	1.00[ASN][1000 genomes]
rs56978296	1.00[ASN][1000 genomes]
rs57258372	1.00[ASN][1000 genomes]
rs58370206	1.00[ASN][1000 genomes]
rs58752744	1.00[ASN][1000 genomes]
rs59143029	1.00[ASN][1000 genomes]
rs59704871	1.00[ASN][1000 genomes]
rs60042461	1.00[ASN][1000 genomes]
rs60649741	1.00[ASN][1000 genomes]
rs60695012	1.00[ASN][1000 genomes]
rs62531915	1.00[ASN][1000 genomes]
rs62531917	1.00[ASN][1000 genomes]
rs62531929	1.00[ASN][1000 genomes]
rs62531930	1.00[ASN][1000 genomes]
rs62533399	1.00[ASN][1000 genomes]
rs6987819	1.00[ASN][1000 genomes]
rs6988736	1.00[ASN][1000 genomes]
rs7010079	1.00[ASN][1000 genomes]
rs73313438	0.83[EUR][1000 genomes]
rs73313463	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319373	1.00[ASN][1000 genomes]
rs73319376	1.00[ASN][1000 genomes]
rs73319379	1.00[ASN][1000 genomes]
rs73319388	1.00[ASN][1000 genomes]
rs73319391	1.00[ASN][1000 genomes]
rs73319397	1.00[ASN][1000 genomes]
rs73319402	1.00[ASN][1000 genomes]
rs73321307	1.00[ASN][1000 genomes]
rs73321311	1.00[ASN][1000 genomes]
rs73321314	1.00[ASN][1000 genomes]
rs73321315	1.00[ASN][1000 genomes]
rs73321321	1.00[ASN][1000 genomes]
rs73321333	1.00[ASN][1000 genomes]
rs73321347	1.00[ASN][1000 genomes]
rs73321352	1.00[ASN][1000 genomes]
rs73321368	1.00[ASN][1000 genomes]
rs73321374	1.00[ASN][1000 genomes]
rs73321375	1.00[ASN][1000 genomes]
rs73708330	1.00[ASN][1000 genomes]
rs73708331	1.00[ASN][1000 genomes]
rs73708333	1.00[ASN][1000 genomes]
rs73708494	1.00[ASN][1000 genomes]
rs73708496	1.00[ASN][1000 genomes]
rs73710214	1.00[ASN][1000 genomes]
rs73710217	1.00[ASN][1000 genomes]
rs7817162	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7827972	0.90[EUR][1000 genomes]
rs7830872	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119449200-119475400	Weak transcription	Gastric	stomach
2	chr8:119462600-119476000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:119462600-119485000	Weak transcription	Brain Cingulate Gyrus	brain
4	chr8:119467400-119469000	Weak transcription	Brain Substantia Nigra	brain
5	chr8:119467400-119470000	Weak transcription	Left Ventricle	heart
6	chr8:119467400-119475600	Weak transcription	Esophagus	oesophagus
7	chr8:119467400-119476000	Weak transcription	Aorta	Aorta
8	chr8:119468800-119469000	Enhancers	Brain Angular Gyrus	brain

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