Variant report

Variant	rs73319379
Chromosome Location	chr8:119618200-119618201
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119617998..119620916-chr8:119621606..119623559,2	K562	blood:

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10090978	1.00[ASN][1000 genomes]
rs10095856	1.00[ASN][1000 genomes]
rs10505339	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505340	1.00[ASN][1000 genomes]
rs10505341	1.00[ASN][1000 genomes]
rs16891301	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891323	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17682473	1.00[ASN][1000 genomes]
rs17749697	1.00[ASN][1000 genomes]
rs2030453	0.91[EUR][1000 genomes]
rs2030454	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41423651	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4641102	1.00[ASN][1000 genomes]
rs55666480	1.00[ASN][1000 genomes]
rs56206420	1.00[ASN][1000 genomes]
rs56234774	1.00[ASN][1000 genomes]
rs56707073	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56766049	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56976172	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56978296	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57258372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57833773	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58370206	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58752744	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59143029	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59704871	1.00[ASN][1000 genomes]
rs60042461	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60649741	1.00[ASN][1000 genomes]
rs60695012	1.00[ASN][1000 genomes]
rs62531915	1.00[ASN][1000 genomes]
rs62531917	1.00[ASN][1000 genomes]
rs62531929	1.00[ASN][1000 genomes]
rs62531930	1.00[ASN][1000 genomes]
rs62533399	1.00[ASN][1000 genomes]
rs6987819	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988736	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010079	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313463	1.00[ASN][1000 genomes]
rs73319373	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319376	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319388	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319391	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319397	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319402	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321307	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321311	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321314	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321315	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321321	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321333	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321347	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321352	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321368	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321374	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321375	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321386	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321401	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323004	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323005	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323007	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323008	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323016	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73708330	1.00[ASN][1000 genomes]
rs73708331	1.00[ASN][1000 genomes]
rs73708333	1.00[ASN][1000 genomes]
rs73708494	1.00[ASN][1000 genomes]
rs73708496	1.00[ASN][1000 genomes]
rs73710214	1.00[ASN][1000 genomes]
rs73710217	1.00[ASN][1000 genomes]
rs7817162	1.00[ASN][1000 genomes]
rs7830872	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891413	chr8:119607281-119679668	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1928288	chr8:119617828-119618252	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119600600-119622600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:119605800-119631800	Weak transcription	Fetal Intestine Small	intestine
3	chr8:119609200-119633000	Weak transcription	Gastric	stomach
4	chr8:119609400-119633600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:119610000-119622000	Weak transcription	Lung	lung
6	chr8:119610400-119626600	Weak transcription	Brain Anterior Caudate	brain
7	chr8:119611400-119618800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:119614400-119618600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr8:119614400-119621400	Weak transcription	Brain Substantia Nigra	brain
10	chr8:119614600-119618800	Weak transcription	Brain Hippocampus Middle	brain
11	chr8:119614600-119619000	Weak transcription	Brain Angular Gyrus	brain
12	chr8:119614600-119626600	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links