Variant report

Variant	rs41423651
Chromosome Location	chr8:119641254-119641255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:119633322..119635580-chr8:119639291..119641315,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177570	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10090978	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10095856	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10505339	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505340	1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs10505341	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16891301	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891323	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891338	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030453	0.91[EUR][1000 genomes]
rs2030454	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2514593	1.00[JPT][hapmap]
rs4512404	1.00[JPT][hapmap]
rs4641102	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs55666480	1.00[ASN][1000 genomes]
rs56206420	1.00[ASN][1000 genomes]
rs56707073	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56766049	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56976172	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56978296	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57258372	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57833773	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58370206	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58752744	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59143029	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59704871	1.00[ASN][1000 genomes]
rs60042461	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60649741	1.00[ASN][1000 genomes]
rs60695012	1.00[ASN][1000 genomes]
rs62531915	1.00[ASN][1000 genomes]
rs62531917	1.00[ASN][1000 genomes]
rs62531929	1.00[ASN][1000 genomes]
rs62531930	1.00[ASN][1000 genomes]
rs6987819	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988736	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010079	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313463	1.00[ASN][1000 genomes]
rs73319373	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319376	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319379	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319388	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319391	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319397	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319402	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321307	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321311	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321314	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321315	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321321	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321333	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321347	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321352	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321368	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321374	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321375	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321386	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321387	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321401	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323004	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323005	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323007	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323008	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323016	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73708330	1.00[ASN][1000 genomes]
rs73708331	1.00[ASN][1000 genomes]
rs73708333	1.00[ASN][1000 genomes]
rs73708494	1.00[ASN][1000 genomes]
rs73708496	1.00[ASN][1000 genomes]
rs73710214	1.00[ASN][1000 genomes]
rs73710217	1.00[ASN][1000 genomes]
rs7817162	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7830872	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891413	chr8:119607281-119679668	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1814789	chr8:119627671-119672134	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv465786	chr8:119627671-119767165	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv612048	chr8:119627671-119767165	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv972574	chr8:119634666-119651085	Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv465787	chr8:119641169-119726242	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv470231	chr8:119641169-119726242	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv612049	chr8:119641169-119726242	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119635000-119650400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:119635200-119645200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:119639800-119641600	Enhancers	GM12878-XiMat	blood
4	chr8:119640400-119641400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr8:119641000-119641400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:119641000-119641600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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