Variant report

Variant	rs73321352
Chromosome Location	chr8:119660621-119660622
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10090978	1.00[ASN][1000 genomes]
rs10095856	1.00[ASN][1000 genomes]
rs10505339	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10505340	1.00[ASN][1000 genomes]
rs10505341	1.00[ASN][1000 genomes]
rs16891301	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891323	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16891338	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2030453	0.82[EUR][1000 genomes]
rs2030454	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41423651	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4641102	1.00[ASN][1000 genomes]
rs55666480	1.00[ASN][1000 genomes]
rs56206420	1.00[ASN][1000 genomes]
rs56707073	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56766049	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56976172	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56978296	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57258372	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57833773	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58370206	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58752744	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59143029	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59704871	1.00[ASN][1000 genomes]
rs60042461	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60695012	1.00[ASN][1000 genomes]
rs62531915	1.00[ASN][1000 genomes]
rs62531917	1.00[ASN][1000 genomes]
rs62531929	1.00[ASN][1000 genomes]
rs62531930	1.00[ASN][1000 genomes]
rs6987819	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988736	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7010079	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73313463	1.00[ASN][1000 genomes]
rs73319373	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319376	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319379	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319388	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319391	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319397	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73319402	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321307	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321311	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321314	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321315	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321321	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321333	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321347	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321368	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321374	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321375	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321386	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321387	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73321401	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323004	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323005	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323007	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323008	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73323016	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73708330	1.00[ASN][1000 genomes]
rs73708331	1.00[ASN][1000 genomes]
rs73708333	1.00[ASN][1000 genomes]
rs73710214	1.00[ASN][1000 genomes]
rs73710217	1.00[ASN][1000 genomes]
rs7830872	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891413	chr8:119607281-119679668	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1814789	chr8:119627671-119672134	Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv465786	chr8:119627671-119767165	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv612048	chr8:119627671-119767165	Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv465787	chr8:119641169-119726242	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv470231	chr8:119641169-119726242	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv612049	chr8:119641169-119726242	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119658600-119663400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr8:119658600-119663800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:119659200-119663400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:119659400-119663200	Weak transcription	Osteobl	bone
5	chr8:119659600-119662800	Weak transcription	NHDF-Ad	bronchial
6	chr8:119659600-119663200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links