Variant report

Variant	rs4641102
Chromosome Location	chr8:119567719-119567720
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs10090978	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10095856	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10505339	1.00[ASN][1000 genomes]
rs10505340	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10505341	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16891301	1.00[ASN][1000 genomes]
rs16891323	1.00[ASN][1000 genomes]
rs16891338	1.00[ASN][1000 genomes]
rs17682473	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17749697	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2030454	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2514593	1.00[JPT][hapmap]
rs41423651	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4512404	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs55666480	1.00[ASN][1000 genomes]
rs56206420	1.00[ASN][1000 genomes]
rs56234774	1.00[ASN][1000 genomes]
rs56707073	1.00[ASN][1000 genomes]
rs56766049	1.00[ASN][1000 genomes]
rs56976172	1.00[ASN][1000 genomes]
rs56978296	1.00[ASN][1000 genomes]
rs57258372	1.00[ASN][1000 genomes]
rs57833773	1.00[ASN][1000 genomes]
rs58370206	1.00[ASN][1000 genomes]
rs58752744	1.00[ASN][1000 genomes]
rs59143029	1.00[ASN][1000 genomes]
rs59704871	1.00[ASN][1000 genomes]
rs60042461	1.00[ASN][1000 genomes]
rs60649741	1.00[ASN][1000 genomes]
rs60695012	1.00[ASN][1000 genomes]
rs62531915	1.00[ASN][1000 genomes]
rs62531917	0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs62531929	1.00[ASN][1000 genomes]
rs62531930	1.00[ASN][1000 genomes]
rs62533399	1.00[ASN][1000 genomes]
rs6987819	1.00[ASN][1000 genomes]
rs6988736	1.00[ASN][1000 genomes]
rs7010079	1.00[ASN][1000 genomes]
rs73313463	1.00[ASN][1000 genomes]
rs73319373	1.00[ASN][1000 genomes]
rs73319376	1.00[ASN][1000 genomes]
rs73319379	1.00[ASN][1000 genomes]
rs73319388	1.00[ASN][1000 genomes]
rs73319391	1.00[ASN][1000 genomes]
rs73319397	1.00[ASN][1000 genomes]
rs73319402	1.00[ASN][1000 genomes]
rs73321307	1.00[ASN][1000 genomes]
rs73321311	1.00[ASN][1000 genomes]
rs73321314	1.00[ASN][1000 genomes]
rs73321315	1.00[ASN][1000 genomes]
rs73321321	1.00[ASN][1000 genomes]
rs73321333	1.00[ASN][1000 genomes]
rs73321347	1.00[ASN][1000 genomes]
rs73321352	1.00[ASN][1000 genomes]
rs73321368	1.00[ASN][1000 genomes]
rs73321374	1.00[ASN][1000 genomes]
rs73321375	1.00[ASN][1000 genomes]
rs73321386	1.00[ASN][1000 genomes]
rs73321387	1.00[ASN][1000 genomes]
rs73321401	1.00[ASN][1000 genomes]
rs73323004	1.00[ASN][1000 genomes]
rs73323005	1.00[ASN][1000 genomes]
rs73323007	1.00[ASN][1000 genomes]
rs73323008	1.00[ASN][1000 genomes]
rs73323016	1.00[ASN][1000 genomes]
rs73708330	1.00[ASN][1000 genomes]
rs73708331	1.00[ASN][1000 genomes]
rs73708333	1.00[ASN][1000 genomes]
rs73708494	1.00[ASN][1000 genomes]
rs73708496	1.00[ASN][1000 genomes]
rs73710214	1.00[ASN][1000 genomes]
rs73710217	1.00[ASN][1000 genomes]
rs7817162	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7830872	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032681	chr8:119153316-119609948	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv539737	chr8:119153316-119609948	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv831443	chr8:119390590-119590662	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	nsv6362	chr8:119554736-119599269	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119567000-119568000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr8:119567000-119568200	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr8:119567000-119568200	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr8:119567000-119568400	Enhancers	NHDF-Ad	bronchial
5	chr8:119567000-119568600	Enhancers	Fetal Lung	lung
6	chr8:119567200-119568600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
7	chr8:119567400-119568200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr8:119567400-119568200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:119567400-119568200	Enhancers	Brain Substantia Nigra	brain
10	chr8:119567400-119568800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:119567600-119568000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr8:119567600-119568000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr8:119567600-119568400	Enhancers	Brain Inferior Temporal Lobe	brain

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