Variant report
| Variant | rs62531930 |
|---|---|
| Chromosome Location | chr8:119601962-119601963 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:73)
| rs_ID | r2[population] |
|---|---|
| rs10090978 | 1.00[ASN][1000 genomes] |
| rs10095856 | 1.00[ASN][1000 genomes] |
| rs10505339 | 1.00[ASN][1000 genomes] |
| rs10505340 | 1.00[ASN][1000 genomes] |
| rs10505341 | 1.00[ASN][1000 genomes] |
| rs16891229 | 0.90[AFR][1000 genomes] |
| rs16891301 | 1.00[ASN][1000 genomes] |
| rs16891323 | 1.00[ASN][1000 genomes] |
| rs16891338 | 1.00[ASN][1000 genomes] |
| rs17682473 | 1.00[ASN][1000 genomes] |
| rs17749697 | 1.00[ASN][1000 genomes] |
| rs2030454 | 1.00[ASN][1000 genomes] |
| rs41423651 | 1.00[ASN][1000 genomes] |
| rs4641102 | 1.00[ASN][1000 genomes] |
| rs55666480 | 1.00[ASN][1000 genomes] |
| rs56206420 | 1.00[ASN][1000 genomes] |
| rs56234774 | 1.00[ASN][1000 genomes] |
| rs56707073 | 1.00[ASN][1000 genomes] |
| rs56766049 | 1.00[ASN][1000 genomes] |
| rs56976172 | 1.00[ASN][1000 genomes] |
| rs56978296 | 1.00[ASN][1000 genomes] |
| rs57258372 | 1.00[ASN][1000 genomes] |
| rs57833773 | 1.00[ASN][1000 genomes] |
| rs58370206 | 1.00[ASN][1000 genomes] |
| rs58752744 | 1.00[ASN][1000 genomes] |
| rs59143029 | 1.00[ASN][1000 genomes] |
| rs59704871 | 1.00[ASN][1000 genomes] |
| rs60042461 | 1.00[ASN][1000 genomes] |
| rs60649741 | 1.00[ASN][1000 genomes] |
| rs60695012 | 1.00[ASN][1000 genomes] |
| rs62531915 | 1.00[ASN][1000 genomes] |
| rs62531917 | 1.00[ASN][1000 genomes] |
| rs62531929 | 1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62533399 | 1.00[ASN][1000 genomes] |
| rs6987819 | 1.00[ASN][1000 genomes] |
| rs6988736 | 1.00[ASN][1000 genomes] |
| rs7010079 | 1.00[ASN][1000 genomes] |
| rs73313463 | 1.00[ASN][1000 genomes] |
| rs73319373 | 1.00[ASN][1000 genomes] |
| rs73319376 | 1.00[ASN][1000 genomes] |
| rs73319379 | 1.00[ASN][1000 genomes] |
| rs73319388 | 1.00[ASN][1000 genomes] |
| rs73319391 | 1.00[ASN][1000 genomes] |
| rs73319397 | 1.00[ASN][1000 genomes] |
| rs73319402 | 1.00[ASN][1000 genomes] |
| rs73321307 | 1.00[ASN][1000 genomes] |
| rs73321311 | 1.00[ASN][1000 genomes] |
| rs73321314 | 1.00[ASN][1000 genomes] |
| rs73321315 | 1.00[ASN][1000 genomes] |
| rs73321321 | 1.00[ASN][1000 genomes] |
| rs73321333 | 1.00[ASN][1000 genomes] |
| rs73321347 | 1.00[ASN][1000 genomes] |
| rs73321352 | 1.00[ASN][1000 genomes] |
| rs73321368 | 1.00[ASN][1000 genomes] |
| rs73321374 | 1.00[ASN][1000 genomes] |
| rs73321375 | 1.00[ASN][1000 genomes] |
| rs73321386 | 1.00[ASN][1000 genomes] |
| rs73321387 | 1.00[ASN][1000 genomes] |
| rs73321401 | 1.00[ASN][1000 genomes] |
| rs73323004 | 1.00[ASN][1000 genomes] |
| rs73323005 | 1.00[ASN][1000 genomes] |
| rs73323007 | 1.00[ASN][1000 genomes] |
| rs73323008 | 1.00[ASN][1000 genomes] |
| rs73323016 | 1.00[ASN][1000 genomes] |
| rs73708330 | 1.00[ASN][1000 genomes] |
| rs73708331 | 1.00[ASN][1000 genomes] |
| rs73708333 | 1.00[ASN][1000 genomes] |
| rs73708494 | 1.00[ASN][1000 genomes] |
| rs73708496 | 1.00[ASN][1000 genomes] |
| rs73710214 | 1.00[ASN][1000 genomes] |
| rs73710217 | 1.00[ASN][1000 genomes] |
| rs7817162 | 1.00[ASN][1000 genomes] |
| rs7830872 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1032681 | chr8:119153316-119609948 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv539737 | chr8:119153316-119609948 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:119585800-119602400 | Weak transcription | Pancreas | Pancrea |
| 2 | chr8:119595000-119602600 | Weak transcription | Rectal Mucosa Donor 29 | rectum |
| 3 | chr8:119600200-119610600 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
| 4 | chr8:119600600-119622600 | Weak transcription | Pancreatic Islets | Pancreatic Islet |
| 5 | chr8:119601200-119603600 | Enhancers | GM12878-XiMat | blood |
| 6 | chr8:119601200-119604600 | Weak transcription | Fetal Intestine Small | intestine |
| 7 | chr8:119601600-119602000 | Weak transcription | Left Ventricle | heart |
