Variant report

Variant	rs11985256
Chromosome Location	chr8:51250557-51250558
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10086203	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10087774	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10087960	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10093114	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10095465	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10095599	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10095759	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10095977	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10102970	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10282858	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10283045	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10283105	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10283106	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10283221	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs10504104	0.85[AMR][1000 genomes]
rs10504105	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs11984985	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11985591	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11988564	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11988748	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11989642	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11991913	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11993064	0.84[AFR][1000 genomes]
rs11996185	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11996262	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11997100	0.83[AFR][1000 genomes]
rs11997543	0.84[AFR][1000 genomes]
rs11997557	0.84[AFR][1000 genomes]
rs11998275	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16914723	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16914738	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16914745	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28378585	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28417739	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28446113	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28480358	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28546889	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28597814	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28616251	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28640202	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28681508	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28691575	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28736414	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28813492	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28838001	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs28845183	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs58720841	0.84[AFR][1000 genomes]
rs59508370	0.84[AFR][1000 genomes]
rs61620844	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7012956	0.83[AFR][1000 genomes]
rs7357386	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7357569	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs9298312	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv1832233	chr8:51225111-51256438	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51243200-51271600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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