Variant report

Variant	rs11985420
Chromosome Location	chr8:119840584-119840585
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1948468	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55791507	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56066811	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56268043	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57800698	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58035109	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58191749	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58235246	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61475380	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709004	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709005	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709006	1.00[AMR][1000 genomes]
rs73709007	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709009	1.00[AMR][1000 genomes]
rs73709011	1.00[AMR][1000 genomes]
rs73709013	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709015	1.00[AMR][1000 genomes]
rs73709018	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709019	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119837800-119848200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:119839800-119841600	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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