Variant report

Variant	rs73709015
Chromosome Location	chr8:119850044-119850045
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11985420	1.00[AMR][1000 genomes]
rs1948468	1.00[AMR][1000 genomes]
rs55791507	1.00[AMR][1000 genomes]
rs56066811	1.00[AMR][1000 genomes]
rs56268043	1.00[AMR][1000 genomes]
rs57800698	1.00[AMR][1000 genomes]
rs58035109	1.00[AMR][1000 genomes]
rs58191749	1.00[AMR][1000 genomes]
rs58235246	1.00[AMR][1000 genomes]
rs61475380	1.00[AMR][1000 genomes]
rs73709004	1.00[AMR][1000 genomes]
rs73709005	1.00[AMR][1000 genomes]
rs73709006	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709007	1.00[AMR][1000 genomes]
rs73709009	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73709013	1.00[AMR][1000 genomes]
rs73709018	1.00[AMR][1000 genomes]
rs73709019	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891414	chr8:119755490-119881550	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	nsv831444	chr8:119757355-119915966	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:119848200-119851600	Enhancers	Hela-S3	cervix
2	chr8:119848200-119852200	Enhancers	HMEC	breast
3	chr8:119848800-119850600	Enhancers	Fetal Intestine Small	intestine
4	chr8:119848800-119852200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:119849000-119850200	Enhancers	Fetal Intestine Large	intestine
6	chr8:119849000-119850800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr8:119849200-119850200	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr8:119849400-119850400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:119849400-119850400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:119849400-119850600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr8:119849400-119850600	Enhancers	NHEK	skin
12	chr8:119849600-119850200	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr8:119849600-119850400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:119849800-119850400	Enhancers	Duodenum Mucosa	Duodenum
15	chr8:119849800-119850400	Enhancers	HSMM	muscle
16	chr8:119849800-119850400	Enhancers	NH-A	brain
17	chr8:119849800-119850400	Enhancers	Osteobl	bone
18	chr8:119849800-119851400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr8:119850000-119850200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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