Variant report

Variant	rs11986010
Chromosome Location	chr8:124530634-124530635
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:124530339..124532901-chr8:124542582..124544213,2	MCF-7	breast:
2	chr8:124529913..124532401-chr8:124596221..124598221,2	MCF-7	breast:
3	chr8:124522912..124526262-chr8:124527454..124531580,5	K562	blood:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11986300	1.00[ASN][1000 genomes]
rs11992825	1.00[ASN][1000 genomes]
rs11996069	1.00[ASN][1000 genomes]
rs13439060	1.00[ASN][1000 genomes]
rs57385663	1.00[ASN][1000 genomes]
rs59488911	1.00[ASN][1000 genomes]
rs62520915	1.00[ASN][1000 genomes]
rs62521280	1.00[ASN][1000 genomes]
rs62521282	1.00[ASN][1000 genomes]
rs62521283	1.00[ASN][1000 genomes]
rs7000759	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7006420	1.00[ASN][1000 genomes]
rs9650084	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124510200-124549200	Weak transcription	Fetal Brain Male	brain
2	chr8:124510400-124531800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:124512000-124542200	Weak transcription	Liver	Liver
4	chr8:124512400-124532600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr8:124515600-124543600	Weak transcription	Brain Germinal Matrix	brain
6	chr8:124519400-124532600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr8:124520800-124532400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr8:124520800-124542200	Weak transcription	Lung	lung
9	chr8:124525800-124542400	Weak transcription	Fetal Brain Female	brain
10	chr8:124526400-124537600	Weak transcription	Gastric	stomach
11	chr8:124526600-124532200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:124527400-124531600	Enhancers	Fetal Heart	heart
13	chr8:124528200-124531400	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr8:124528400-124530800	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr8:124528400-124531000	Enhancers	NH-A	brain
16	chr8:124528400-124531200	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr8:124528400-124531200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr8:124528400-124532400	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr8:124528400-124532800	Enhancers	Primary T cells fromperipheralblood	blood
20	chr8:124528400-124535400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
21	chr8:124528600-124531400	Enhancers	Right Atrium	heart
22	chr8:124528600-124531400	Enhancers	HUVEC	blood vessel
23	chr8:124528600-124533000	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr8:124528600-124534000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr8:124528600-124534200	Enhancers	HMEC	breast
26	chr8:124528600-124535400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
27	chr8:124528800-124530800	Enhancers	Duodenum Mucosa	Duodenum
28	chr8:124528800-124530800	Enhancers	HepG2	liver
29	chr8:124529000-124532200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr8:124529200-124531000	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr8:124529200-124531000	Enhancers	HSMMtube	muscle
32	chr8:124529200-124531400	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr8:124529200-124532600	Weak transcription	Right Ventricle	heart
34	chr8:124529400-124530800	Enhancers	Stomach Smooth Muscle	stomach
35	chr8:124529400-124531000	Enhancers	Adipose Nuclei	Adipose
36	chr8:124529400-124531000	Weak transcription	Left Ventricle	heart
37	chr8:124529400-124531000	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr8:124529400-124531000	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr8:124529400-124531200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr8:124529400-124531800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:124529400-124532000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr8:124529400-124532400	Weak transcription	Thymus	Thymus
43	chr8:124529400-124534800	Weak transcription	Esophagus	oesophagus
44	chr8:124529600-124530800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
45	chr8:124529600-124535400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr8:124529600-124536200	Weak transcription	Fetal Muscle Trunk	muscle
47	chr8:124529600-124541800	Weak transcription	Placenta	Placenta
48	chr8:124529600-124542200	Weak transcription	Pancreas	Pancrea
49	chr8:124529600-124542400	Weak transcription	Primary B cells from peripheral blood	blood
50	chr8:124529600-124542400	Weak transcription	Spleen	Spleen

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