Variant report

Variant	rs11986300
Chromosome Location	chr8:124518343-124518344
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:124515797..124518447-chr8:124522385..124524679,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11986010	1.00[ASN][1000 genomes]
rs11992825	1.00[ASN][1000 genomes]
rs11996069	1.00[ASN][1000 genomes]
rs13439060	1.00[ASN][1000 genomes]
rs57385663	1.00[ASN][1000 genomes]
rs59488911	1.00[ASN][1000 genomes]
rs62520915	1.00[ASN][1000 genomes]
rs62521280	1.00[ASN][1000 genomes]
rs62521282	1.00[ASN][1000 genomes]
rs62521283	1.00[ASN][1000 genomes]
rs7000759	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7006420	1.00[ASN][1000 genomes]
rs9650084	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831450	chr8:124471741-124661359	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124508400-124518600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:124508400-124518600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:124509200-124528600	Weak transcription	Small Intestine	intestine
4	chr8:124510200-124549200	Weak transcription	Fetal Brain Male	brain
5	chr8:124510400-124531800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr8:124510800-124523000	Weak transcription	Fetal Intestine Large	intestine
7	chr8:124511000-124518600	Weak transcription	Gastric	stomach
8	chr8:124511000-124526000	Strong transcription	HSMMtube	muscle
9	chr8:124511400-124520000	Enhancers	Fetal Heart	heart
10	chr8:124512000-124542200	Weak transcription	Liver	Liver
11	chr8:124512200-124521000	Weak transcription	Primary B cells from cord blood	blood
12	chr8:124512200-124528400	Weak transcription	NHLF	lung
13	chr8:124512200-124529000	Weak transcription	Colonic Mucosa	Colon
14	chr8:124512400-124519600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:124512400-124532600	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr8:124512600-124518600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr8:124512600-124519200	Strong transcription	Brain Hippocampus Middle	brain
18	chr8:124512800-124519200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr8:124513000-124519000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr8:124513200-124518400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr8:124513200-124518600	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr8:124513200-124519200	Strong transcription	Brain Anterior Caudate	brain
23	chr8:124513200-124519200	Strong transcription	Brain Cingulate Gyrus	brain
24	chr8:124513200-124519200	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr8:124513200-124519400	Strong transcription	Brain Substantia Nigra	brain
26	chr8:124513200-124524800	Genic enhancers	Stomach Smooth Muscle	stomach
27	chr8:124513200-124525400	Strong transcription	Ovary	ovary
28	chr8:124513400-124518600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr8:124513400-124519000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr8:124513400-124519400	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr8:124513400-124529000	Genic enhancers	Colon Smooth Muscle	Colon
32	chr8:124513800-124519000	Strong transcription	Osteobl	bone
33	chr8:124513800-124520400	Genic enhancers	Rectal Smooth Muscle	rectum
34	chr8:124513800-124525000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr8:124513800-124529000	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr8:124514000-124518400	Weak transcription	Right Ventricle	heart
37	chr8:124514000-124519400	Strong transcription	Brain Angular Gyrus	brain
38	chr8:124514000-124528600	Weak transcription	Stomach Mucosa	stomach
39	chr8:124514000-124529200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr8:124514200-124518800	Strong transcription	Brain Inferior Temporal Lobe	brain
41	chr8:124514200-124529400	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr8:124514400-124519000	Genic enhancers	Fetal Stomach	stomach
43	chr8:124514400-124519000	Enhancers	Dnd41	blood
44	chr8:124515000-124519000	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr8:124515200-124525200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr8:124515200-124528400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr8:124515600-124543600	Weak transcription	Brain Germinal Matrix	brain
48	chr8:124515800-124518600	Strong transcription	Skeletal Muscle Female	skeletal muscle
49	chr8:124515800-124522800	Weak transcription	HUVEC	blood vessel
50	chr8:124515800-124523000	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links