Variant report

Variant	rs11986818
Chromosome Location	chr8:91111757-91111758
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90996132..90998933-chr8:91109607..91112377,2	K562	blood:
2	chr8:91111364..91113093-chr8:91113728..91115750,2	K562	blood:
3	chr8:91109881..91112864-chr8:91114233..91115750,2	K562	blood:
4	chr8:91110151..91112011-chr8:91117979..91120218,2	K562	blood:

Variant related genes	Relation type
ENSG00000104320	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10098170	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10099102	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10282890	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10504886	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10504887	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1076559	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10956407	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11989543	1.00[EUR][1000 genomes]
rs11989795	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11991697	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11992856	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11995294	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11998021	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12114835	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13312839	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13312846	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1805785	0.87[ASN][1000 genomes]
rs1805805	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1805820	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1805829	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1805866	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1805879	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28376519	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28654557	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58332188	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470521	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6985667	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6992671	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6998280	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7005583	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7009268	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7017304	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs717873	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72550706	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs741779	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7812899	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7813356	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7818989	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7821822	1.00[EUR][1000 genomes]
rs7823833	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7831876	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7834469	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7837423	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7840431	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs972376	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv34347	chr8:91101339-91179126	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91110000-91114000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links