Variant report

Variant	rs1805785
Chromosome Location	chr8:90963976-90963977
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:90957509..90960088-chr8:90962475..90965336,2	MCF-7	breast:
2	chr8:90961129..90964552-chr8:90965641..90969617,4	K562	blood:
3	chr8:90963705..90966005-chr8:90977442..90979124,2	MCF-7	breast:
4	chr8:90963205..90965219-chr8:90983143..90985297,2	MCF-7	breast:
5	chr8:90956519..90959231-chr8:90962710..90964667,2	K562	blood:
6	chr8:90770061..90771579-chr8:90962914..90964599,2	MCF-7	breast:
7	chr8:90916507..90918102-chr8:90963523..90965242,2	K562	blood:
8	chr8:90961019..90964644-chr8:90995252..90998339,3	MCF-7	breast:
9	chr8:90963036..90965198-chr8:90995326..90998084,2	MCF-7	breast:
10	chr8:90950728..90952538-chr8:90963276..90965322,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000104320	Chromatin interaction
ENSG00000104312	Chromatin interaction

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10091400	1.00[CHB][hapmap]
rs10098170	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10099102	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1024156	1.00[CHB][hapmap]
rs10282890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10504886	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10504887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1076559	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10956407	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11986818	0.87[ASN][1000 genomes]
rs11989543	0.87[AFR][1000 genomes]
rs11989795	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11991697	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11992856	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11992886	1.00[CHB][hapmap]
rs11995294	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11998021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12114835	1.00[ASN][1000 genomes]
rs13262484	1.00[CHB][hapmap]
rs13312839	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13312846	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13312973	1.00[CHB][hapmap]
rs13312981	1.00[CHB][hapmap]
rs13312987	1.00[CHB][hapmap]
rs16901426	1.00[CHB][hapmap]
rs16901712	1.00[CHB][hapmap]
rs1805805	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1805820	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1805829	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1805866	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[ASN][1000 genomes]
rs1805879	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs28376519	0.87[ASN][1000 genomes]
rs28654557	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58332188	0.87[ASN][1000 genomes]
rs6470477	1.00[CHB][hapmap]
rs6470521	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6985667	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6986890	1.00[CHB][hapmap]
rs6992671	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6998280	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6998735	1.00[CHB][hapmap]
rs7000851	1.00[CHB][hapmap]
rs7001024	1.00[CHB][hapmap]
rs7004411	1.00[CHB][hapmap]
rs7004759	1.00[CHB][hapmap]
rs7005583	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7009268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7013140	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7017304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs717873	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs72550706	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs741779	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7812899	1.00[ASN][1000 genomes]
rs7813356	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7818989	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7821822	1.00[CEU][hapmap];0.87[ASN][1000 genomes]
rs7823833	1.00[ASN][1000 genomes]
rs7828593	1.00[CHB][hapmap]
rs7829683	1.00[CHB][hapmap]
rs7831876	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7834469	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7837423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7840431	1.00[ASN][1000 genomes]
rs972376	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[ASN][1000 genomes]
rs983925	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90915400-90966800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:90915800-90995000	Weak transcription	Fetal Brain Male	brain
3	chr8:90916600-90969600	Weak transcription	Brain Substantia Nigra	brain
4	chr8:90917600-90975400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr8:90924800-90986600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:90925400-90970200	Weak transcription	Pancreas	Pancrea
7	chr8:90925400-90979200	Weak transcription	Gastric	stomach
8	chr8:90925600-90967200	Weak transcription	Colonic Mucosa	Colon
9	chr8:90925600-90975200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr8:90927000-90978000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr8:90927200-90964200	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr8:90927600-90988400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr8:90927800-90969800	Weak transcription	Esophagus	oesophagus
14	chr8:90927800-90970200	Weak transcription	Spleen	Spleen
15	chr8:90927800-90970400	Weak transcription	Right Ventricle	heart
16	chr8:90927800-90996000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr8:90928000-90965200	Weak transcription	Fetal Kidney	kidney
18	chr8:90928000-90970400	Weak transcription	Small Intestine	intestine
19	chr8:90929400-90966000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr8:90931600-90965200	Weak transcription	HepG2	liver
21	chr8:90934000-90965400	Weak transcription	Fetal Brain Female	brain
22	chr8:90937200-90969800	Weak transcription	Brain Cingulate Gyrus	brain
23	chr8:90937200-90970400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr8:90937200-90970400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr8:90937600-90969400	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr8:90937600-90970000	Weak transcription	Lung	lung
27	chr8:90938200-90974600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
28	chr8:90938400-90970000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr8:90939000-90964800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr8:90941400-90970000	Weak transcription	Brain Germinal Matrix	brain
31	chr8:90942600-90977400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr8:90942600-90982600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr8:90942800-90970000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr8:90944400-90977000	Strong transcription	Dnd41	blood
35	chr8:90944400-90982800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr8:90944600-90982000	Strong transcription	Monocytes-CD14+_RO01746	blood
37	chr8:90944800-90984400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr8:90947200-90964400	Weak transcription	HMEC	breast
39	chr8:90947200-90964600	Weak transcription	Brain Hippocampus Middle	brain
40	chr8:90947200-90969800	Weak transcription	Brain Angular Gyrus	brain
41	chr8:90947400-90965400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr8:90948200-90974000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
43	chr8:90952200-90970400	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr8:90952600-90964200	Weak transcription	Left Ventricle	heart
45	chr8:90952600-90966400	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr8:90952600-90966800	Weak transcription	Thymus	Thymus
47	chr8:90952800-90967000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr8:90954000-90965600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr8:90954200-90967000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr8:90954600-90966800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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