Variant report

Variant	rs983925
Chromosome Location	chr8:90894216-90894217
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:90860444..90862985-chr8:90893846..90895436,2	MCF-7	breast:
2	chr8:90888047..90890965-chr8:90892432..90896610,8	MCF-7	breast:
3	chr8:90893552..90896595-chr8:90897347..90900085,4	MCF-7	breast:
4	chr8:90862840..90866421-chr8:90892520..90896963,6	MCF-7	breast:
5	chr8:90868769..90874649-chr8:90891359..90894975,5	MCF-7	breast:
6	chr8:90860020..90861677-chr8:90894087..90895653,8	MCF-7	breast:
7	chr8:90894021..90896724-chr8:91012217..91014562,2	MCF-7	breast:
8	chr8:90877915..90882075-chr8:90892079..90895246,4	MCF-7	breast:
9	chr8:90892121..90894527-chr8:90895605..90898340,3	K562	blood:
10	chr8:90882092..90883688-chr8:90893463..90895234,2	MCF-7	breast:
11	chr8:90892774..90903972-chr8:90910662..90917000,28	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000207359	Chromatin interaction
ENSG00000104325	Chromatin interaction
ENSG00000164823	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10091400	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[MKK][hapmap];1.00[ASN][1000 genomes]
rs10098170	1.00[CHB][hapmap]
rs10102707	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1024156	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10504887	1.00[CHB][hapmap]
rs10956407	1.00[CHB][hapmap]
rs11989795	1.00[CHB][hapmap]
rs11991697	1.00[CHB][hapmap]
rs11992856	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11992886	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11995294	1.00[CHB][hapmap]
rs11998021	1.00[CHB][hapmap]
rs13262484	1.00[CHB][hapmap]
rs13312846	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs13312973	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[LWK][hapmap];0.83[MKK][hapmap];1.00[ASN][1000 genomes]
rs13312981	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];1.00[ASN][1000 genomes]
rs13312987	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16901426	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16901712	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1805785	1.00[CHB][hapmap]
rs1805805	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1805820	1.00[CHB][hapmap]
rs1805829	1.00[CHB][hapmap]
rs1805866	1.00[CHB][hapmap]
rs1805879	1.00[CHB][hapmap]
rs28488469	1.00[ASN][1000 genomes]
rs28533586	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28578207	1.00[ASN][1000 genomes]
rs62531975	0.83[ASN][1000 genomes]
rs62531976	0.83[ASN][1000 genomes]
rs62531977	0.83[ASN][1000 genomes]
rs62531978	0.83[ASN][1000 genomes]
rs6470477	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6470521	1.00[CHB][hapmap]
rs6984959	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6986890	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6992671	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6998280	1.00[CHB][hapmap]
rs6998717	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6998735	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7000851	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];1.00[ASN][1000 genomes]
rs7001024	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7004247	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7004411	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7004759	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7005165	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7005583	1.00[CHB][hapmap]
rs7009268	1.00[CHB][hapmap]
rs7013140	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7017304	1.00[CHB][hapmap]
rs717873	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs73696831	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7813356	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7818989	1.00[CHB][hapmap]
rs7828593	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7829683	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7831876	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7834469	1.00[CHB][hapmap]
rs7837423	1.00[CHB][hapmap]
rs7841459	1.00[CHB][hapmap]
rs972376	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90890200-90904600	Weak transcription	Pancreas	Pancrea
2	chr8:90890800-90899000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr8:90892000-90894600	Enhancers	A549	lung
4	chr8:90893000-90894800	Weak transcription	Stomach Mucosa	stomach
5	chr8:90893000-90905200	Weak transcription	Primary B cells from cord blood	blood
6	chr8:90893600-90895600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr8:90893600-90895600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr8:90893600-90895600	Enhancers	NH-A	brain
9	chr8:90893600-90895800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr8:90893600-90897200	Enhancers	Hela-S3	cervix
11	chr8:90893800-90894400	Enhancers	Duodenum Mucosa	Duodenum
12	chr8:90893800-90894600	Enhancers	HUVEC	blood vessel
13	chr8:90893800-90895400	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr8:90893800-90895600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr8:90893800-90895600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr8:90893800-90895600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr8:90894000-90895200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr8:90894000-90895600	Enhancers	Osteobl	bone
19	chr8:90894000-90896000	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr8:90894000-90897200	Weak transcription	Gastric	stomach
21	chr8:90894000-90900400	Weak transcription	HSMMtube	muscle
22	chr8:90894000-90905800	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr8:90894200-90894600	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr8:90894200-90894600	Weak transcription	H9 Cell Line	embryonic stem cell

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