Variant report

Variant	rs6470477
Chromosome Location	chr8:90892548-90892549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90888047..90890965-chr8:90892432..90896610,8	MCF-7	breast:
2	chr8:90862840..90866421-chr8:90892520..90896963,6	MCF-7	breast:
3	chr8:90868769..90874649-chr8:90891359..90894975,5	MCF-7	breast:
4	chr8:90768979..90772732-chr8:90891618..90893815,3	MCF-7	breast:
5	chr8:90877915..90882075-chr8:90892079..90895246,4	MCF-7	breast:
6	chr8:90892121..90894527-chr8:90895605..90898340,3	K562	blood:
7	chr8:90891348..90893141-chr8:91002737..91005355,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104312	Chromatin interaction
ENSG00000251136	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10091400	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10098170	1.00[CHB][hapmap]
rs10102707	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1024156	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10504887	1.00[CHB][hapmap]
rs10956407	1.00[CHB][hapmap]
rs11989795	1.00[CHB][hapmap]
rs11991697	1.00[CHB][hapmap]
rs11992856	1.00[CHB][hapmap]
rs11992886	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11995294	1.00[CHB][hapmap]
rs11998021	1.00[CHB][hapmap]
rs13262484	1.00[CHB][hapmap]
rs13312846	1.00[CHB][hapmap]
rs13312973	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13312981	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13312987	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16901426	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16901712	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1805785	1.00[CHB][hapmap]
rs1805805	1.00[CHB][hapmap]
rs1805820	1.00[CHB][hapmap]
rs1805829	1.00[CHB][hapmap]
rs1805866	1.00[CHB][hapmap]
rs1805879	1.00[CHB][hapmap]
rs28488469	1.00[ASN][1000 genomes]
rs28533586	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28578207	1.00[ASN][1000 genomes]
rs62531975	0.83[ASN][1000 genomes]
rs62531976	0.83[ASN][1000 genomes]
rs62531977	0.83[ASN][1000 genomes]
rs62531978	0.83[ASN][1000 genomes]
rs6470521	1.00[CHB][hapmap]
rs6984959	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6986890	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6992671	1.00[CHB][hapmap]
rs6998280	1.00[CHB][hapmap]
rs6998717	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6998735	1.00[CHB][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7000851	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7001024	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7004247	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7004411	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7004759	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7005165	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7005583	1.00[CHB][hapmap]
rs7009268	1.00[CHB][hapmap]
rs7013140	1.00[CHB][hapmap]
rs7017304	1.00[CHB][hapmap]
rs717873	1.00[CHB][hapmap]
rs73696831	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7813356	1.00[CHB][hapmap]
rs7818989	1.00[CHB][hapmap]
rs7828593	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7829683	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7831876	1.00[CHB][hapmap]
rs7834469	1.00[CHB][hapmap]
rs7837423	1.00[CHB][hapmap]
rs7841459	1.00[CHB][hapmap]
rs972376	1.00[CHB][hapmap]
rs983925	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90888000-90893600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr8:90889200-90893600	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr8:90890200-90904600	Weak transcription	Pancreas	Pancrea
4	chr8:90890800-90899000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr8:90892000-90894600	Enhancers	A549	lung
6	chr8:90892200-90893000	Strong transcription	Primary B cells from cord blood	blood

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