Variant report

Variant	rs16901712
Chromosome Location	chr8:90936245-90936246
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:90929789..90933770-chr8:90935433..90938378,4	MCF-7	breast:
2	chr8:90933665..90936303-chr8:90985952..90987854,2	K562	blood:
3	chr8:90930769..90935448-chr8:90935737..90940521,5	K562	blood:
4	chr8:90769985..90771836-chr8:90934715..90937562,2	MCF-7	breast:
5	chr8:90913131..90919306-chr8:90925970..90937421,31	MCF-7	breast:
6	chr8:90934420..90937604-chr8:90939539..90943396,5	MCF-7	breast:
7	chr8:90935734..90937510-chr8:90939959..90942535,2	MCF-7	breast:
8	chr8:90927894..90929556-chr8:90935749..90937538,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000104312	Chromatin interaction
ENSG00000164823	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10091400	1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10098170	1.00[CHB][hapmap]
rs10102707	1.00[ASN][1000 genomes]
rs1024156	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10504887	1.00[CHB][hapmap]
rs10956407	1.00[CHB][hapmap]
rs11989795	1.00[CHB][hapmap]
rs11991697	1.00[CHB][hapmap]
rs11992856	1.00[CHB][hapmap]
rs11992886	1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11995294	1.00[CHB][hapmap]
rs11998021	1.00[CHB][hapmap]
rs13262484	1.00[CHB][hapmap]
rs13312846	1.00[CHB][hapmap]
rs13312973	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13312981	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13312987	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16901426	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1805785	1.00[CHB][hapmap]
rs1805805	1.00[CHB][hapmap]
rs1805820	1.00[CHB][hapmap]
rs1805829	1.00[CHB][hapmap]
rs1805866	1.00[CHB][hapmap]
rs1805879	1.00[CHB][hapmap]
rs28488469	0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28533586	1.00[ASN][1000 genomes]
rs28578207	1.00[ASN][1000 genomes]
rs62531975	0.83[ASN][1000 genomes]
rs62531976	0.83[ASN][1000 genomes]
rs62531977	0.83[ASN][1000 genomes]
rs62531978	0.83[ASN][1000 genomes]
rs6470477	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6470521	1.00[CHB][hapmap]
rs6984959	1.00[ASN][1000 genomes]
rs6986890	1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6992671	1.00[CHB][hapmap]
rs6998280	1.00[CHB][hapmap]
rs6998717	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6998735	1.00[CHB][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7000851	1.00[CHB][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7001024	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7004247	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7004411	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7004759	1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7005165	1.00[ASN][1000 genomes]
rs7005583	1.00[CHB][hapmap]
rs7009268	1.00[CHB][hapmap]
rs7013140	1.00[CHB][hapmap]
rs7017304	1.00[CHB][hapmap]
rs717873	1.00[CHB][hapmap]
rs73696831	1.00[ASN][1000 genomes]
rs7813356	1.00[CHB][hapmap]
rs7818989	1.00[CHB][hapmap]
rs7828593	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7829683	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7831876	1.00[CHB][hapmap]
rs7834469	1.00[CHB][hapmap]
rs7837423	1.00[CHB][hapmap]
rs7841459	1.00[CHB][hapmap]
rs972376	1.00[CHB][hapmap]
rs983925	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90915400-90966800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:90915600-90950800	Weak transcription	Stomach Mucosa	stomach
3	chr8:90915800-90995000	Weak transcription	Fetal Brain Male	brain
4	chr8:90916000-90961400	Weak transcription	Fetal Heart	heart
5	chr8:90916400-90937000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr8:90916600-90969600	Weak transcription	Brain Substantia Nigra	brain
7	chr8:90917000-90937000	Weak transcription	Psoas Muscle	Psoas
8	chr8:90917600-90953600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr8:90917600-90975400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr8:90918800-90951800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr8:90919200-90936800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr8:90921800-90941600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr8:90922200-90938800	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr8:90922400-90940000	Strong transcription	Primary T helper cells fromperipheralblood	blood
15	chr8:90923400-90936800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr8:90923400-90936800	Weak transcription	Placenta	Placenta
17	chr8:90924800-90940000	Strong transcription	HUES48 Cell Line	embryonic stem cell
18	chr8:90924800-90986600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr8:90925000-90939000	Strong transcription	HUES6 Cell Line	embryonic stem cell
20	chr8:90925200-90942600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr8:90925400-90938400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr8:90925400-90939000	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr8:90925400-90940600	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr8:90925400-90941600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr8:90925400-90941800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr8:90925400-90945000	Weak transcription	Rectal Smooth Muscle	rectum
27	chr8:90925400-90952000	Weak transcription	Fetal Intestine Small	intestine
28	chr8:90925400-90956600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr8:90925400-90970200	Weak transcription	Pancreas	Pancrea
30	chr8:90925400-90979200	Weak transcription	Gastric	stomach
31	chr8:90925600-90936800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr8:90925600-90939600	Weak transcription	Brain Germinal Matrix	brain
33	chr8:90925600-90942200	Strong transcription	Primary hematopoietic stem cells	blood
34	chr8:90925600-90961600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr8:90925600-90967200	Weak transcription	Colonic Mucosa	Colon
36	chr8:90925600-90975200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr8:90927000-90936800	Weak transcription	Brain Angular Gyrus	brain
38	chr8:90927000-90978000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
39	chr8:90927200-90964200	Weak transcription	Cortex derived primary cultured neurospheres	brain
40	chr8:90927600-90988400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr8:90927800-90936800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr8:90927800-90936800	Weak transcription	NH-A	brain
43	chr8:90927800-90937000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr8:90927800-90937000	Weak transcription	Aorta	Aorta
45	chr8:90927800-90937000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr8:90927800-90937000	Weak transcription	Thymus	Thymus
47	chr8:90927800-90940200	Weak transcription	Fetal Stomach	stomach
48	chr8:90927800-90945000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr8:90927800-90945000	Weak transcription	Fetal Lung	lung
50	chr8:90927800-90946600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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