Variant report

Variant	rs7829683
Chromosome Location	chr8:90899916-90899917
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90893552..90896595-chr8:90897347..90900085,4	MCF-7	breast:
2	chr8:90899859..90901365-chr8:90994833..90997440,2	MCF-7	breast:
3	chr8:90897922..90900728-chr8:90996397..90998045,2	MCF-7	breast:
4	chr8:90879570..90882252-chr8:90898908..90901899,2	MCF-7	breast:
5	chr8:90892774..90903972-chr8:90910662..90917000,28	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164823	Chromatin interaction
ENSG00000207359	Chromatin interaction
ENSG00000104320	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10091400	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[MKK][hapmap];1.00[ASN][1000 genomes]
rs10098170	1.00[CHB][hapmap]
rs10102707	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1024156	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10504887	1.00[CHB][hapmap]
rs10956407	1.00[CHB][hapmap]
rs11989795	1.00[CHB][hapmap]
rs11991697	1.00[CHB][hapmap]
rs11992856	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs11992886	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11995294	1.00[CHB][hapmap]
rs11998021	1.00[CHB][hapmap]
rs13262484	1.00[CHB][hapmap]
rs13312846	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs13312973	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.83[LWK][hapmap];0.83[MKK][hapmap];1.00[ASN][1000 genomes]
rs13312981	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];1.00[ASN][1000 genomes]
rs13312987	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16901426	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16901712	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs1805785	1.00[CHB][hapmap]
rs1805805	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs1805820	1.00[CHB][hapmap]
rs1805829	1.00[CHB][hapmap]
rs1805866	1.00[CHB][hapmap]
rs1805879	1.00[CHB][hapmap]
rs28488469	1.00[ASN][1000 genomes]
rs28533586	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28578207	1.00[ASN][1000 genomes]
rs62531975	0.83[ASN][1000 genomes]
rs62531976	0.83[ASN][1000 genomes]
rs62531977	0.83[ASN][1000 genomes]
rs62531978	0.83[ASN][1000 genomes]
rs6470477	1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6470521	1.00[CHB][hapmap]
rs6984959	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6986890	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6992671	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs6998280	1.00[CHB][hapmap]
rs6998717	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6998735	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7000851	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.86[MKK][hapmap];1.00[ASN][1000 genomes]
rs7001024	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7004247	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7004411	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7004759	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7005165	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7005583	1.00[CHB][hapmap]
rs7009268	1.00[CHB][hapmap]
rs7013140	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7017304	1.00[CHB][hapmap]
rs717873	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs73696831	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7813356	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7818989	1.00[CHB][hapmap]
rs7828593	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7831876	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs7834469	1.00[CHB][hapmap]
rs7837423	1.00[CHB][hapmap]
rs7841459	1.00[CHB][hapmap]
rs972376	1.00[CHB][hapmap]
rs983925	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90890200-90904600	Weak transcription	Pancreas	Pancrea
2	chr8:90893000-90905200	Weak transcription	Primary B cells from cord blood	blood
3	chr8:90894000-90900400	Weak transcription	HSMMtube	muscle
4	chr8:90894000-90905800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr8:90894400-90913400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:90895200-90900400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:90895200-90913800	Weak transcription	Brain Angular Gyrus	brain
8	chr8:90895400-90900400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr8:90895400-90904600	Weak transcription	Brain Substantia Nigra	brain
10	chr8:90895400-90904800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:90895600-90900400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:90895600-90913600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr8:90895800-90906000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:90897600-90900200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr8:90897600-90901800	Weak transcription	Stomach Mucosa	stomach
16	chr8:90897600-90903200	Enhancers	Hela-S3	cervix
17	chr8:90897600-90914000	Weak transcription	Gastric	stomach
18	chr8:90897800-90900000	Enhancers	Placenta	Placenta
19	chr8:90898200-90902600	Enhancers	Muscle Satellite Cultured Cells	--
20	chr8:90898200-90902600	Enhancers	NH-A	brain
21	chr8:90898400-90900800	Enhancers	Fetal Lung	lung
22	chr8:90898600-90900400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr8:90898600-90900400	Weak transcription	HepG2	liver
24	chr8:90898600-90902400	Enhancers	NHLF	lung
25	chr8:90898600-90902600	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr8:90898600-90902600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr8:90898600-90902800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr8:90898600-90903200	Enhancers	HUES64 Cell Line	embryonic stem cell
29	chr8:90898600-90907800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr8:90898800-90900800	Flanking Active TSS	A549	lung
31	chr8:90898800-90904800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr8:90899000-90900000	Enhancers	Liver	Liver
33	chr8:90899000-90900600	Enhancers	Primary T cells from cord blood	blood
34	chr8:90899000-90900800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
35	chr8:90899000-90902400	Enhancers	Primary hematopoietic stem cells	blood
36	chr8:90899200-90900600	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr8:90899200-90900600	Enhancers	Primary T helper cells PMA-I stimulated	--
38	chr8:90899200-90900800	Enhancers	ES-I3 Cell Line	embryonic stem cell
39	chr8:90899200-90902400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr8:90899200-90902600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr8:90899200-90913800	Weak transcription	Thymus	Thymus
42	chr8:90899400-90900000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr8:90899400-90900000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
44	chr8:90899400-90900400	Enhancers	iPS-18 Cell Line	embryonic stem cell
45	chr8:90899400-90900600	Enhancers	iPS-20b Cell Line	embryonic stem cell
46	chr8:90899400-90900800	Enhancers	iPS-15b Cell Line	embryonic stem cell
47	chr8:90899400-90900800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr8:90899400-90900800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr8:90899400-90901600	Enhancers	HUES48 Cell Line	embryonic stem cell
50	chr8:90899400-90902200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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