Variant report

Variant	rs13312987
Chromosome Location	chr8:90945849-90945850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:90912199..90917044-chr8:90943490..90947084,5	K562	blood:
2	chr8:90945156..90947172-chr8:90948218..90949783,3	MCF-7	breast:
3	chr8:90939323..90942734-chr8:90943165..90947331,4	K562	blood:
4	chr8:90912620..90916170-chr8:90944488..90948488,4	MCF-7	breast:
5	chr8:90943415..90946102-chr8:90947383..90949597,2	K562	blood:
6	chr8:90944388..90946500-chr8:90996587..90998552,2	MCF-7	breast:
7	chr8:90918054..90920317-chr8:90945191..90947946,2	MCF-7	breast:
8	chr8:90912199..90916362-chr8:90944740..90947172,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000164823	Chromatin interaction
ENSG00000207359	Chromatin interaction
ENSG00000104320	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10091400	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10098170	1.00[CHB][hapmap]
rs10102707	1.00[ASN][1000 genomes]
rs1024156	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10504887	1.00[CHB][hapmap]
rs10956407	1.00[CHB][hapmap]
rs11989795	1.00[CHB][hapmap]
rs11991697	1.00[CHB][hapmap]
rs11992856	1.00[CHB][hapmap]
rs11992886	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11995294	1.00[CHB][hapmap]
rs11998021	1.00[CHB][hapmap]
rs13262484	1.00[CHB][hapmap]
rs13312846	1.00[CHB][hapmap]
rs13312973	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13312981	1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16901426	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs16901712	1.00[CHB][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs1805785	1.00[CHB][hapmap]
rs1805805	1.00[CHB][hapmap]
rs1805820	1.00[CHB][hapmap]
rs1805829	1.00[CHB][hapmap]
rs1805866	1.00[CHB][hapmap]
rs1805879	1.00[CHB][hapmap]
rs28488469	1.00[ASN][1000 genomes]
rs28533586	1.00[ASN][1000 genomes]
rs28578207	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62531975	0.83[ASN][1000 genomes]
rs62531976	0.83[ASN][1000 genomes]
rs62531977	0.83[ASN][1000 genomes]
rs62531978	0.83[ASN][1000 genomes]
rs6470477	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6470521	1.00[CHB][hapmap]
rs6984959	1.00[ASN][1000 genomes]
rs6986890	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6992671	1.00[CHB][hapmap]
rs6998280	1.00[CHB][hapmap]
rs6998717	1.00[ASN][1000 genomes]
rs6998735	1.00[CHB][hapmap];0.92[YRI][hapmap];1.00[ASN][1000 genomes]
rs7000851	1.00[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7001024	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7004247	1.00[ASN][1000 genomes]
rs7004411	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7004759	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7005165	1.00[ASN][1000 genomes]
rs7005583	1.00[CHB][hapmap]
rs7009268	1.00[CHB][hapmap]
rs7013140	1.00[CHB][hapmap]
rs7017304	1.00[CHB][hapmap]
rs717873	1.00[CHB][hapmap]
rs73696831	1.00[ASN][1000 genomes]
rs7813356	1.00[CHB][hapmap]
rs7818989	1.00[CHB][hapmap]
rs7828593	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7829683	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs7831876	1.00[CHB][hapmap]
rs7834469	1.00[CHB][hapmap]
rs7837423	1.00[CHB][hapmap]
rs972376	1.00[CHB][hapmap]
rs983925	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90915400-90966800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:90915600-90950800	Weak transcription	Stomach Mucosa	stomach
3	chr8:90915800-90995000	Weak transcription	Fetal Brain Male	brain
4	chr8:90916000-90961400	Weak transcription	Fetal Heart	heart
5	chr8:90916600-90969600	Weak transcription	Brain Substantia Nigra	brain
6	chr8:90917600-90953600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr8:90917600-90975400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr8:90918800-90951800	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr8:90924800-90986600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr8:90925400-90952000	Weak transcription	Fetal Intestine Small	intestine
11	chr8:90925400-90956600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:90925400-90970200	Weak transcription	Pancreas	Pancrea
13	chr8:90925400-90979200	Weak transcription	Gastric	stomach
14	chr8:90925600-90961600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr8:90925600-90967200	Weak transcription	Colonic Mucosa	Colon
16	chr8:90925600-90975200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr8:90927000-90978000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr8:90927200-90964200	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr8:90927600-90988400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr8:90927800-90946600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr8:90927800-90951800	Weak transcription	Osteobl	bone
22	chr8:90927800-90963800	Weak transcription	NHEK	skin
23	chr8:90927800-90969800	Weak transcription	Esophagus	oesophagus
24	chr8:90927800-90970200	Weak transcription	Spleen	Spleen
25	chr8:90927800-90970400	Weak transcription	Right Ventricle	heart
26	chr8:90927800-90996000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr8:90928000-90965200	Weak transcription	Fetal Kidney	kidney
28	chr8:90928000-90970400	Weak transcription	Small Intestine	intestine
29	chr8:90929200-90961400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr8:90929400-90966000	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr8:90929600-90946600	Weak transcription	Brain Hippocampus Middle	brain
32	chr8:90929800-90951200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr8:90931600-90965200	Weak transcription	HepG2	liver
34	chr8:90932000-90952400	Weak transcription	NHLF	lung
35	chr8:90934000-90965400	Weak transcription	Fetal Brain Female	brain
36	chr8:90935400-90951400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:90937200-90946600	Weak transcription	Brain Angular Gyrus	brain
38	chr8:90937200-90969800	Weak transcription	Brain Cingulate Gyrus	brain
39	chr8:90937200-90970400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr8:90937200-90970400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr8:90937600-90946400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr8:90937600-90946400	Weak transcription	Colon Smooth Muscle	Colon
43	chr8:90937600-90949600	Weak transcription	Left Ventricle	heart
44	chr8:90937600-90952000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr8:90937600-90952000	Weak transcription	HSMMtube	muscle
46	chr8:90937600-90954600	Weak transcription	Brain Anterior Caudate	brain
47	chr8:90937600-90961200	Weak transcription	Psoas Muscle	Psoas
48	chr8:90937600-90969400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr8:90937600-90970000	Weak transcription	Lung	lung
50	chr8:90937800-90946200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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