Variant report

Variant	rs10102707
Chromosome Location	chr8:90909233-90909234
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:6)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:6 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr8:90909072-90910031	A549	lung:	n/a	n/a
2	EP300	chr8:90909066-90910115	A549	lung:	n/a	n/a
3	GATA3	chr8:90909203-90910054	A549	lung:	n/a	n/a
4	SP1	chr8:90909190-90909955	A549	lung:	n/a	n/a
5	FOSL2	chr8:90909164-90910114	A549	lung:	n/a	n/a
6	EP300	chr8:90909057-90909916	A549	lung:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:90901558..90909280-chr8:90911079..90918739,15	K562	blood:
2	chr8:90904207..90906141-chr8:90908303..90910654,2	K562	blood:
3	chr8:90768445..90771938-chr8:90906213..90909369,3	MCF-7	breast:
4	chr8:90906933..90911156-chr8:90913324..90916402,6	K562	blood:
5	chr8:90877837..90880456-chr8:90907247..90910007,2	MCF-7	breast:

No data

Variant related genes	Relation type
OSGIN2	TF binding region
ENSG00000251136	Chromatin interaction
ENSG00000164823	Chromatin interaction
ENSG00000207359	Chromatin interaction
ENSG00000104312	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10091400	1.00[ASN][1000 genomes]
rs1024156	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11992886	1.00[ASN][1000 genomes]
rs13312973	1.00[ASN][1000 genomes]
rs13312981	1.00[ASN][1000 genomes]
rs13312987	1.00[ASN][1000 genomes]
rs16901426	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs16901712	1.00[ASN][1000 genomes]
rs28488469	1.00[ASN][1000 genomes]
rs28533586	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28578207	1.00[ASN][1000 genomes]
rs62531975	0.83[ASN][1000 genomes]
rs62531976	0.83[ASN][1000 genomes]
rs62531977	0.83[ASN][1000 genomes]
rs62531978	0.83[ASN][1000 genomes]
rs6470477	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6984959	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6986890	1.00[ASN][1000 genomes]
rs6998717	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6998735	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7000851	1.00[ASN][1000 genomes]
rs7001024	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7004247	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7004411	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7004759	1.00[ASN][1000 genomes]
rs7005165	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73696831	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7828593	1.00[ASN][1000 genomes]
rs7829683	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs983925	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90894400-90913400	Weak transcription	Duodenum Mucosa	Duodenum
2	chr8:90895200-90913800	Weak transcription	Brain Angular Gyrus	brain
3	chr8:90895600-90913600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr8:90897600-90914000	Weak transcription	Gastric	stomach
5	chr8:90899200-90913800	Weak transcription	Thymus	Thymus
6	chr8:90899400-90913800	Weak transcription	Small Intestine	intestine
7	chr8:90899800-90913600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr8:90900600-90913400	Weak transcription	Liver	Liver
9	chr8:90900600-90913800	Weak transcription	Brain Hippocampus Middle	brain
10	chr8:90900800-90913600	Weak transcription	Fetal Lung	lung
11	chr8:90900800-90913800	Weak transcription	Adipose Nuclei	Adipose
12	chr8:90900800-90913800	Weak transcription	Fetal Muscle Leg	muscle
13	chr8:90902400-90910600	Weak transcription	K562	blood
14	chr8:90902400-90911000	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr8:90902400-90913600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr8:90902400-90913800	Weak transcription	NHLF	lung
17	chr8:90902600-90913200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:90902600-90913400	Weak transcription	NHEK	skin
19	chr8:90902600-90913600	Weak transcription	HepG2	liver
20	chr8:90903200-90911000	Weak transcription	Hela-S3	cervix
21	chr8:90904000-90913400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr8:90904200-90913400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr8:90904600-90913400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr8:90904800-90914000	Weak transcription	Left Ventricle	heart
25	chr8:90905000-90913400	Weak transcription	Aorta	Aorta
26	chr8:90905000-90913600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr8:90905000-90913800	Weak transcription	Right Ventricle	heart
28	chr8:90905000-90914000	Weak transcription	Esophagus	oesophagus
29	chr8:90905000-90914000	Weak transcription	Lung	lung
30	chr8:90905400-90913400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr8:90905600-90913600	Weak transcription	Primary B cells from cord blood	blood
32	chr8:90905600-90913600	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr8:90905800-90913400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr8:90905800-90913600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr8:90905800-90913600	Weak transcription	Stomach Smooth Muscle	stomach
36	chr8:90905800-90913800	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr8:90905800-90913800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr8:90906000-90913800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr8:90906000-90913800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr8:90906200-90912400	Weak transcription	Dnd41	blood
41	chr8:90906200-90913200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr8:90906200-90913200	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr8:90906200-90913200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr8:90906200-90913200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr8:90906200-90913200	Weak transcription	Pancreas	Pancrea
46	chr8:90906200-90913400	Weak transcription	Fetal Intestine Small	intestine
47	chr8:90906200-90913400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr8:90906200-90913600	Weak transcription	Primary T cells from cord blood	blood
49	chr8:90906200-90914000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr8:90906200-90914000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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