Variant report

Variant	rs62531976
Chromosome Location	chr8:90889983-90889984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:90887330..90892473-chr8:90912511..90916002,11	MCF-7	breast:
2	chr8:90859189..90861523-chr8:90887641..90890521,4	MCF-7	breast:
3	chr8:90768728..90770636-chr8:90887798..90890076,2	MCF-7	breast:
4	chr8:90888047..90890965-chr8:90892432..90896610,8	MCF-7	breast:
5	chr8:90884964..90887444-chr8:90889188..90890987,3	K562	blood:
6	chr8:90889480..90891758-chr8:90994219..90995933,2	MCF-7	breast:
7	chr8:90866711..90872793-chr8:90887380..90891820,9	MCF-7	breast:
8	chr8:90883688..90885219-chr8:90888937..90891040,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000164823	Chromatin interaction
ENSG00000251136	Chromatin interaction
ENSG00000104312	Chromatin interaction
ENSG00000207359	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10091400	0.83[ASN][1000 genomes]
rs10102707	0.83[ASN][1000 genomes]
rs1024156	0.83[ASN][1000 genomes]
rs11992886	0.83[ASN][1000 genomes]
rs13312973	0.83[ASN][1000 genomes]
rs13312981	0.83[ASN][1000 genomes]
rs13312987	0.83[ASN][1000 genomes]
rs16901426	0.83[ASN][1000 genomes]
rs16901712	0.83[ASN][1000 genomes]
rs28488469	0.83[ASN][1000 genomes]
rs28533586	0.83[ASN][1000 genomes]
rs28578207	0.83[ASN][1000 genomes]
rs62531975	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62531977	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62531978	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470477	0.83[ASN][1000 genomes]
rs6984959	0.83[ASN][1000 genomes]
rs6986890	0.83[ASN][1000 genomes]
rs6998717	0.83[ASN][1000 genomes]
rs6998735	0.83[ASN][1000 genomes]
rs7000851	0.83[ASN][1000 genomes]
rs7001024	0.83[ASN][1000 genomes]
rs7004247	0.83[ASN][1000 genomes]
rs7004411	0.83[ASN][1000 genomes]
rs7004759	0.83[ASN][1000 genomes]
rs7005165	0.83[ASN][1000 genomes]
rs73696831	0.83[ASN][1000 genomes]
rs7828593	0.83[ASN][1000 genomes]
rs7829683	0.83[ASN][1000 genomes]
rs983925	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90888000-90893600	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr8:90889000-90890200	Enhancers	Pancreas	Pancrea
3	chr8:90889200-90893600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr8:90889800-90890200	Enhancers	Placenta Amnion	Placenta Amnion
5	chr8:90889800-90891400	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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