Variant report

Variant	rs28376519
Chromosome Location	chr8:91098420-91098421
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91085963..91088599-chr8:91096301..91098600,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10098170	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10099102	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10282890	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10504886	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10504887	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1076559	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10956407	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11986818	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11989543	1.00[EUR][1000 genomes]
rs11989795	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11991697	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11992856	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11995294	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11998021	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12114835	0.83[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs13312839	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13312846	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1805785	0.87[ASN][1000 genomes]
rs1805805	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1805820	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1805829	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1805866	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1805879	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28654557	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4477076	0.84[AFR][1000 genomes]
rs58332188	1.00[EUR][1000 genomes]
rs6470521	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6985667	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6992671	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6998280	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7005583	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7009268	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7017304	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs717873	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72550706	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs741779	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7812899	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7813356	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7818989	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7821822	1.00[EUR][1000 genomes]
rs7823833	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7831876	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7834469	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7837423	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7840431	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs972376	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91095200-91098800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr8:91095200-91099200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:91095400-91098600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr8:91095600-91098800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr8:91098200-91099400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr8:91098200-91099600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr8:91098200-91099800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr8:91098200-91099800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr8:91098200-91100600	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr8:91098400-91098600	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr8:91098400-91099000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:91098400-91099800	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr8:91098400-91100000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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