Variant report

Variant	rs4477076
Chromosome Location	chr8:91062820-91062821
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10435550	0.81[EUR][1000 genomes]
rs10435551	0.81[EUR][1000 genomes]
rs10504886	0.89[AFR][1000 genomes]
rs10504888	0.81[EUR][1000 genomes]
rs1076559	0.89[AFR][1000 genomes]
rs10956407	0.89[AFR][1000 genomes]
rs12114835	0.84[AFR][1000 genomes]
rs13312954	0.81[EUR][1000 genomes]
rs16901941	0.81[EUR][1000 genomes]
rs16902273	0.81[EUR][1000 genomes]
rs16902355	0.81[EUR][1000 genomes]
rs16902558	0.81[EUR][1000 genomes]
rs1805805	0.88[AFR][1000 genomes]
rs1805811	0.81[EUR][1000 genomes]
rs1805826	0.81[EUR][1000 genomes]
rs1805837	0.81[EUR][1000 genomes]
rs1805839	0.81[EUR][1000 genomes]
rs1805850	0.81[EUR][1000 genomes]
rs1805855	0.81[EUR][1000 genomes]
rs1805862	0.81[EUR][1000 genomes]
rs1805880	0.81[EUR][1000 genomes]
rs1805882	0.81[EUR][1000 genomes]
rs1805885	0.81[EUR][1000 genomes]
rs1805888	0.81[EUR][1000 genomes]
rs1805892	0.81[EUR][1000 genomes]
rs2074594	0.81[EUR][1000 genomes]
rs2074595	0.81[EUR][1000 genomes]
rs2267542	0.81[EUR][1000 genomes]
rs2280779	0.81[EUR][1000 genomes]
rs28376519	0.84[AFR][1000 genomes]
rs3358	0.81[EUR][1000 genomes]
rs6985667	0.89[AFR][1000 genomes]
rs6989727	0.81[EUR][1000 genomes]
rs6998280	0.93[AFR][1000 genomes]
rs717873	0.89[AFR][1000 genomes]
rs72550706	0.89[AFR][1000 genomes]
rs73306482	0.81[EUR][1000 genomes]
rs741779	0.89[AFR][1000 genomes]
rs769418	0.81[EUR][1000 genomes]
rs7813378	0.81[EUR][1000 genomes]
rs7818138	0.81[EUR][1000 genomes]
rs7822786	0.81[EUR][1000 genomes]
rs7826471	0.81[EUR][1000 genomes]
rs7834282	0.83[ASN][1000 genomes]
rs7837423	0.89[AFR][1000 genomes]
rs7844005	0.81[EUR][1000 genomes]
rs7845155	0.81[EUR][1000 genomes]
rs7845669	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91015600-91066200	Weak transcription	Hela-S3	cervix
2	chr8:91018600-91065400	Weak transcription	HMEC	breast
3	chr8:91027600-91066800	Weak transcription	NHEK	skin
4	chr8:91029400-91066000	Weak transcription	HUVEC	blood vessel
5	chr8:91032000-91064000	Weak transcription	Fetal Brain Male	brain
6	chr8:91032000-91064800	Weak transcription	NHLF	lung
7	chr8:91033800-91064400	Weak transcription	NH-A	brain
8	chr8:91049600-91066800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr8:91049800-91067200	Weak transcription	Osteobl	bone
10	chr8:91050200-91065000	Weak transcription	Small Intestine	intestine
11	chr8:91050200-91066800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr8:91052400-91067200	Weak transcription	Brain Substantia Nigra	brain
13	chr8:91052400-91069200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr8:91052600-91067000	Weak transcription	Brain Angular Gyrus	brain
15	chr8:91053000-91065000	Weak transcription	Psoas Muscle	Psoas
16	chr8:91055600-91074600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr8:91055800-91067200	Weak transcription	NHDF-Ad	bronchial
18	chr8:91055800-91068000	Weak transcription	HSMM	muscle
19	chr8:91056600-91067000	Weak transcription	Fetal Heart	heart
20	chr8:91056800-91063400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr8:91057200-91066400	Weak transcription	GM12878-XiMat	blood
22	chr8:91057800-91093600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr8:91058000-91066000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:91058000-91067200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:91058000-91071400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr8:91058000-91085800	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr8:91058200-91067400	Weak transcription	Fetal Kidney	kidney
28	chr8:91058200-91080200	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr8:91058400-91065000	Weak transcription	Thymus	Thymus
30	chr8:91058400-91066800	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr8:91058400-91067000	Weak transcription	Pancreas	Pancrea
32	chr8:91058400-91067000	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr8:91058400-91067600	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr8:91058400-91067600	Weak transcription	Aorta	Aorta
35	chr8:91058400-91068200	Weak transcription	Lung	lung
36	chr8:91058400-91069000	Weak transcription	Placenta	Placenta
37	chr8:91058600-91063200	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr8:91058600-91063400	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr8:91058600-91063400	Weak transcription	Primary B cells from peripheral blood	blood
40	chr8:91058600-91063400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr8:91058600-91063400	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr8:91058600-91063600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr8:91058600-91063800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr8:91058600-91063800	Weak transcription	Primary neutrophils fromperipheralblood	blood
45	chr8:91058600-91063800	Weak transcription	Fetal Thymus	thymus
46	chr8:91058600-91064000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr8:91058600-91065000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr8:91058600-91065000	Weak transcription	Ovary	ovary
49	chr8:91058600-91065000	Weak transcription	Rectal Smooth Muscle	rectum
50	chr8:91058600-91065400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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