Variant report

Variant	rs1805826
Chromosome Location	chr8:90982556-90982557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:90980689..90982635-chr8:90982915..90985587,2	MCF-7	breast:
2	chr8:90975533..90977445-chr8:90980488..90983211,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10435550	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10435551	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10504888	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12675530	0.92[JPT][hapmap];0.93[MEX][hapmap]
rs13312921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13312954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1468078	0.83[JPT][hapmap]
rs16893166	1.00[ASW][hapmap];0.92[CHB][hapmap];0.83[JPT][hapmap];0.84[MEX][hapmap]
rs16901941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16902273	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16902355	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16902558	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1805811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1805815	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1805824	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805837	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805839	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805850	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1805855	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1805862	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1805880	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1805882	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1805885	1.00[CEU][hapmap];0.92[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1805888	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1805892	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1805894	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1805901	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs1805902	0.86[CHB][hapmap];0.84[JPT][hapmap];0.81[EUR][1000 genomes]
rs1805907	0.86[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs1805911	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1805912	0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1805914	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[EUR][1000 genomes]
rs1805915	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2074594	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2074595	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2267542	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2280779	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3026287	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3758145	0.92[JPT][hapmap]
rs4477076	0.81[EUR][1000 genomes]
rs6989727	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73306482	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs769418	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7813378	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7818138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7822786	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7826471	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7830738	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs7834282	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7844005	1.00[CEU][hapmap];0.92[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7845155	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7845572	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7845669	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90915800-90995000	Weak transcription	Fetal Brain Male	brain
2	chr8:90924800-90986600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:90927600-90988400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr8:90927800-90996000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr8:90942600-90982600	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr8:90944400-90982800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:90944800-90984400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:90962000-90994400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:90962000-90995000	Weak transcription	Aorta	Aorta
10	chr8:90962600-90983400	Strong transcription	Primary T helper cells fromperipheralblood	blood
11	chr8:90965000-90984200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr8:90969600-90983400	Strong transcription	HSMM	muscle
13	chr8:90970600-90988200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:90970800-90983200	Weak transcription	Fetal Brain Female	brain
15	chr8:90970800-90988200	Weak transcription	Pancreas	Pancrea
16	chr8:90970800-90993200	Weak transcription	Psoas Muscle	Psoas
17	chr8:90971000-90994000	Weak transcription	Brain Substantia Nigra	brain
18	chr8:90971200-90994400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr8:90971400-90993800	Weak transcription	Small Intestine	intestine
20	chr8:90971800-90995600	Weak transcription	Right Ventricle	heart
21	chr8:90973600-90988400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr8:90973800-90993800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr8:90974200-90986800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr8:90974200-90993800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr8:90975600-90988400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr8:90975600-90993800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr8:90975600-90993800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr8:90975600-90994000	Weak transcription	Brain Angular Gyrus	brain
29	chr8:90975600-90995800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr8:90975800-90988400	Weak transcription	HMEC	breast
31	chr8:90975800-90993200	Weak transcription	NHDF-Ad	bronchial
32	chr8:90976000-90993800	Weak transcription	Fetal Heart	heart
33	chr8:90976200-90984800	Weak transcription	HSMMtube	muscle
34	chr8:90976200-90993600	Weak transcription	Brain Hippocampus Middle	brain
35	chr8:90976200-90993800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
36	chr8:90976200-90993800	Weak transcription	Brain Germinal Matrix	brain
37	chr8:90976200-90995800	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr8:90976400-90982800	Weak transcription	HUVEC	blood vessel
39	chr8:90976400-90986600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr8:90976400-90986600	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr8:90976400-90986600	Weak transcription	NHLF	lung
42	chr8:90976400-90986800	Weak transcription	Spleen	Spleen
43	chr8:90976400-90990000	Weak transcription	Lung	lung
44	chr8:90976400-90993600	Weak transcription	NHEK	skin
45	chr8:90976400-90993800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr8:90976400-90994400	Weak transcription	Brain Cingulate Gyrus	brain
47	chr8:90976400-90995400	Weak transcription	Thymus	Thymus
48	chr8:90976400-90995600	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr8:90976400-90995800	Weak transcription	Esophagus	oesophagus
50	chr8:90976600-90982600	Weak transcription	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links