Variant report

Variant	rs1805824
Chromosome Location	chr8:90976906-90976907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:90969741..90972805-chr8:90974123..90977910,4	K562	blood:
2	chr8:90972565..90976649-chr8:90976660..90979735,4	MCF-7	breast:
3	chr8:90974711..90977357-chr8:90995076..90998424,3	MCF-7	breast:
4	chr8:90975533..90977445-chr8:90980488..90983211,2	K562	blood:
5	chr8:90965529..90967195-chr8:90975050..90977026,2	MCF-7	breast:
6	chr8:90976407..90978476-chr8:90995188..90998070,2	K562	blood:
7	chr8:90975334..90977907-chr8:90996289..90998070,2	K562	blood:
8	chr8:90975523..90977214-chr8:90977319..90979000,2	K562	blood:
9	chr8:90957962..90962129-chr8:90974305..90978101,4	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000104320	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10435550	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10435551	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10504888	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12675530	0.92[JPT][hapmap]
rs13312921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13312954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1468078	0.84[JPT][hapmap]
rs16893166	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs16901941	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16902273	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16902355	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16902558	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1805811	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1805815	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1805826	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805837	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805839	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1805850	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1805855	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1805862	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1805880	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1805882	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1805885	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1805888	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1805892	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1805894	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1805901	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs1805902	0.86[CHB][hapmap];0.84[JPT][hapmap]
rs1805907	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs1805911	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes]
rs1805912	0.80[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes]
rs1805914	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs1805915	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes]
rs2074594	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2074595	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2267542	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2280779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3026287	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes]
rs3358	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3758145	0.92[JPT][hapmap]
rs6989727	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73306482	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs769418	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7813378	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7818138	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7822786	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7826471	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7830738	0.84[CHB][hapmap];0.83[ASN][1000 genomes]
rs7834282	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7844005	1.00[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7845155	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7845572	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7845669	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90915800-90995000	Weak transcription	Fetal Brain Male	brain
2	chr8:90924800-90986600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:90925400-90979200	Weak transcription	Gastric	stomach
4	chr8:90927000-90978000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr8:90927600-90988400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:90927800-90996000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:90942600-90977400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr8:90942600-90982600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr8:90944400-90977000	Strong transcription	Dnd41	blood
10	chr8:90944400-90982800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr8:90944600-90982000	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr8:90944800-90984400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:90961800-90977600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:90962000-90994400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr8:90962000-90995000	Weak transcription	Aorta	Aorta
16	chr8:90962400-90980200	Strong transcription	Primary neutrophils fromperipheralblood	blood
17	chr8:90962400-90982000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr8:90962600-90982400	Weak transcription	Stomach Mucosa	stomach
19	chr8:90962600-90983400	Strong transcription	Primary T helper cells fromperipheralblood	blood
20	chr8:90963000-90982000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr8:90963800-90977000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
22	chr8:90964600-90977000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:90965000-90984200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr8:90968800-90977200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr8:90968800-90977600	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr8:90968800-90978000	Strong transcription	Primary T helper cells PMA-I stimulated	--
27	chr8:90969000-90977200	Strong transcription	Adipose Nuclei	Adipose
28	chr8:90969000-90981800	Strong transcription	Primary B cells from cord blood	blood
29	chr8:90969400-90977000	Strong transcription	Primary hematopoietic stem cells	blood
30	chr8:90969400-90977000	Strong transcription	Fetal Muscle Trunk	muscle
31	chr8:90969400-90977200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr8:90969600-90983400	Strong transcription	HSMM	muscle
33	chr8:90969800-90977000	Strong transcription	Primary B cells from peripheral blood	blood
34	chr8:90969800-90977000	Strong transcription	Primary T cells fromperipheralblood	blood
35	chr8:90970600-90988200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr8:90970800-90977000	Strong transcription	Hela-S3	cervix
37	chr8:90970800-90979200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr8:90970800-90983200	Weak transcription	Fetal Brain Female	brain
39	chr8:90970800-90988200	Weak transcription	Pancreas	Pancrea
40	chr8:90970800-90993200	Weak transcription	Psoas Muscle	Psoas
41	chr8:90971000-90977200	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr8:90971000-90994000	Weak transcription	Brain Substantia Nigra	brain
43	chr8:90971200-90994400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr8:90971400-90993800	Weak transcription	Small Intestine	intestine
45	chr8:90971800-90995600	Weak transcription	Right Ventricle	heart
46	chr8:90972200-90977000	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr8:90972200-90977000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr8:90972200-90979200	Weak transcription	Fetal Stomach	stomach
49	chr8:90972800-90977000	Weak transcription	Fetal Intestine Small	intestine
50	chr8:90973400-90977200	Strong transcription	GM12878-XiMat	blood

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