Variant report

Variant	rs1805894
Chromosome Location	chr8:91067669-91067670
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91066157..91069252-chr8:91070814..91073830,4	K562	blood:
2	chr8:91066837..91069760-chr8:91090559..91092238,2	K562	blood:

Variant related genes	Relation type
ENSG00000104327	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10435550	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10435551	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10504888	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12675530	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap]
rs13312921	0.86[CHB][hapmap];0.92[JPT][hapmap]
rs13312954	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16901941	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16902273	0.93[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16902355	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16902558	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16903927	0.85[ASN][1000 genomes]
rs16904073	1.00[CEU][hapmap]
rs1805811	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1805824	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1805826	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1805837	0.86[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1805839	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1805850	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1805855	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1805862	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1805880	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1805882	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1805885	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1805888	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1805892	0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1805901	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1805902	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1805907	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1805911	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1805912	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1805914	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1805915	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2074594	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2074595	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2267542	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2280779	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3026287	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3358	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3758145	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs6989727	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73306482	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs769418	0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7813378	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7818138	0.86[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7818433	0.86[ASN][1000 genomes]
rs7822786	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7826471	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7834282	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7844005	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7845155	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7845572	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs7845669	0.93[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91052400-91069200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr8:91055600-91074600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr8:91055800-91068000	Weak transcription	HSMM	muscle
4	chr8:91057800-91093600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:91058000-91071400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr8:91058000-91085800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:91058200-91080200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:91058400-91068200	Weak transcription	Lung	lung
9	chr8:91058400-91069000	Weak transcription	Placenta	Placenta
10	chr8:91058600-91069000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr8:91058600-91069000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:91058600-91069600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr8:91058600-91069800	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr8:91058600-91070200	Weak transcription	Colon Smooth Muscle	Colon
15	chr8:91058600-91070400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr8:91058600-91070400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr8:91058600-91070800	Weak transcription	HSMMtube	muscle
18	chr8:91058600-91078000	Weak transcription	HUES64 Cell Line	embryonic stem cell
19	chr8:91058800-91069000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr8:91059000-91069000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr8:91059000-91071000	Weak transcription	Primary T cells from cord blood	blood
22	chr8:91059000-91074400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr8:91059000-91084800	Weak transcription	Brain Anterior Caudate	brain
24	chr8:91059400-91069800	Weak transcription	Fetal Muscle Leg	muscle
25	chr8:91061400-91071000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr8:91063400-91068200	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr8:91063400-91068600	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr8:91063600-91068400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:91063600-91068800	Strong transcription	Adipose Nuclei	Adipose
30	chr8:91064000-91068400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:91064000-91068800	Strong transcription	Primary B cells from cord blood	blood
32	chr8:91065400-91069000	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr8:91065400-91069200	Weak transcription	NH-A	brain
34	chr8:91065600-91068800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr8:91065600-91070000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr8:91065600-91070200	Weak transcription	Fetal Brain Male	brain
37	chr8:91065600-91070400	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr8:91065600-91070800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr8:91065800-91068000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr8:91065800-91069000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr8:91065800-91069400	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr8:91065800-91069800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr8:91065800-91070000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr8:91065800-91070000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr8:91065800-91070000	Weak transcription	Fetal Thymus	thymus
46	chr8:91065800-91070200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr8:91065800-91070400	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr8:91065800-91070400	Weak transcription	Fetal Intestine Large	intestine
49	chr8:91065800-91070400	Weak transcription	Thymus	Thymus
50	chr8:91065800-91072800	Weak transcription	Left Ventricle	heart

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