Variant report

Variant	rs3758145
Chromosome Location	chr8:91097499-91097500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr8:91097472-91097603	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:91085963..91088599-chr8:91096301..91098600,2	K562	blood:
2	chr8:91085654..91087463-chr8:91095150..91097801,2	K562	blood:

Variant related genes	Relation type
CALB1	TF binding region

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10435551	0.82[ASN][1000 genomes]
rs10504888	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10504891	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12675530	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13312921	0.92[JPT][hapmap]
rs13312954	0.92[JPT][hapmap]
rs16901941	0.92[JPT][hapmap]
rs16902273	1.00[JPT][hapmap]
rs16902355	1.00[JPT][hapmap]
rs16902558	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs16903927	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16904011	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1805811	0.92[JPT][hapmap]
rs1805824	0.92[JPT][hapmap]
rs1805826	0.92[JPT][hapmap]
rs1805837	0.92[JPT][hapmap]
rs1805855	1.00[JPT][hapmap]
rs1805862	1.00[JPT][hapmap]
rs1805880	1.00[JPT][hapmap]
rs1805882	1.00[JPT][hapmap]
rs1805885	1.00[JPT][hapmap]
rs1805888	1.00[JPT][hapmap]
rs1805892	0.86[ASN][1000 genomes]
rs1805894	0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1805901	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs1805902	0.86[CHB][hapmap];0.92[JPT][hapmap];0.92[ASN][1000 genomes]
rs1805907	0.86[CHB][hapmap];0.93[JPT][hapmap];0.92[ASN][1000 genomes]
rs1805911	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1805912	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1805914	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs1805915	0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2074594	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs2074595	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2280779	0.92[JPT][hapmap]
rs3026287	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3358	0.92[JPT][hapmap]
rs6982611	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6997558	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7001425	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs769418	0.92[JPT][hapmap]
rs7813378	1.00[JPT][hapmap]
rs7818138	0.92[JPT][hapmap]
rs7818433	0.90[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7822786	1.00[JPT][hapmap]
rs7826471	1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs7836381	0.86[AMR][1000 genomes]
rs7844005	1.00[JPT][hapmap]
rs7845155	1.00[JPT][hapmap]
rs7845669	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91095200-91098400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr8:91095200-91098400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr8:91095200-91098800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr8:91095200-91099200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr8:91095400-91098200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr8:91095400-91098600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr8:91095600-91098200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr8:91095600-91098400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr8:91095600-91098800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr8:91095800-91098200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:91095800-91098400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr8:91096000-91098200	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr8:91096000-91098200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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