Variant report

Variant	rs1805892
Chromosome Location	chr8:91065072-91065073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10435550	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10435551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10504888	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12675530	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs13312921	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.96[EUR][1000 genomes]
rs13312954	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16901941	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16902273	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16902355	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16902558	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16903927	0.82[ASN][1000 genomes]
rs1805811	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1805815	0.96[EUR][1000 genomes]
rs1805824	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1805826	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1805837	0.86[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1805839	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1805850	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1805855	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1805862	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1805880	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1805882	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1805885	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1805888	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1805894	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1805901	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1805902	1.00[CHB][hapmap];0.92[JPT][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1805907	1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1805911	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1805912	0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1805914	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1805915	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2074594	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2074595	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2267542	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2280779	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3026287	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3358	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3758145	0.86[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs4477076	0.81[EUR][1000 genomes]
rs6989727	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs72561476	0.84[AFR][1000 genomes]
rs73306482	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs769418	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7813378	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7818138	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7818433	0.83[ASN][1000 genomes]
rs7822786	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7826471	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7834282	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7844005	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7845155	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7845572	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7845669	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891183	chr8:90975550-91111193	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
2	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91015600-91066200	Weak transcription	Hela-S3	cervix
2	chr8:91018600-91065400	Weak transcription	HMEC	breast
3	chr8:91027600-91066800	Weak transcription	NHEK	skin
4	chr8:91029400-91066000	Weak transcription	HUVEC	blood vessel
5	chr8:91049600-91066800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr8:91049800-91067200	Weak transcription	Osteobl	bone
7	chr8:91050200-91066800	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr8:91052400-91067200	Weak transcription	Brain Substantia Nigra	brain
9	chr8:91052400-91069200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr8:91052600-91067000	Weak transcription	Brain Angular Gyrus	brain
11	chr8:91055600-91074600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr8:91055800-91067200	Weak transcription	NHDF-Ad	bronchial
13	chr8:91055800-91068000	Weak transcription	HSMM	muscle
14	chr8:91056600-91067000	Weak transcription	Fetal Heart	heart
15	chr8:91057200-91066400	Weak transcription	GM12878-XiMat	blood
16	chr8:91057800-91093600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr8:91058000-91066000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:91058000-91067200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr8:91058000-91071400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr8:91058000-91085800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr8:91058200-91067400	Weak transcription	Fetal Kidney	kidney
22	chr8:91058200-91080200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr8:91058400-91066800	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr8:91058400-91067000	Weak transcription	Pancreas	Pancrea
25	chr8:91058400-91067000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr8:91058400-91067600	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr8:91058400-91067600	Weak transcription	Aorta	Aorta
28	chr8:91058400-91068200	Weak transcription	Lung	lung
29	chr8:91058400-91069000	Weak transcription	Placenta	Placenta
30	chr8:91058600-91065400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr8:91058600-91066400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr8:91058600-91066400	Weak transcription	Brain Germinal Matrix	brain
33	chr8:91058600-91066400	Weak transcription	Brain Hippocampus Middle	brain
34	chr8:91058600-91066600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr8:91058600-91067000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr8:91058600-91067200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr8:91058600-91067600	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr8:91058600-91067600	Weak transcription	Fetal Intestine Small	intestine
39	chr8:91058600-91069000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr8:91058600-91069000	Weak transcription	Stomach Smooth Muscle	stomach
41	chr8:91058600-91069600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr8:91058600-91069800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr8:91058600-91070200	Weak transcription	Colon Smooth Muscle	Colon
44	chr8:91058600-91070400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr8:91058600-91070400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr8:91058600-91070800	Weak transcription	HSMMtube	muscle
47	chr8:91058600-91078000	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr8:91058800-91069000	Weak transcription	Muscle Satellite Cultured Cells	--
49	chr8:91059000-91067000	Weak transcription	Right Ventricle	heart
50	chr8:91059000-91067400	Weak transcription	Spleen	Spleen

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