Variant report

Variant	rs6997558
Chromosome Location	chr8:91169121-91169122
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10504888	0.92[JPT][hapmap]
rs10504891	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12675530	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13312921	0.92[JPT][hapmap]
rs16901941	1.00[AFR][1000 genomes]
rs16902273	0.92[JPT][hapmap]
rs16902355	0.92[JPT][hapmap]
rs16902558	0.92[JPT][hapmap]
rs16903927	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16904011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16904016	1.00[AFR][1000 genomes]
rs16904073	1.00[CEU][hapmap]
rs1805811	1.00[AFR][1000 genomes]
rs1805824	0.92[JPT][hapmap]
rs1805826	0.92[JPT][hapmap]
rs1805837	0.92[JPT][hapmap]
rs1805850	1.00[AFR][1000 genomes]
rs1805855	0.92[JPT][hapmap]
rs1805862	0.92[JPT][hapmap]
rs1805880	0.92[JPT][hapmap]
rs1805882	0.92[JPT][hapmap]
rs1805885	0.92[JPT][hapmap]
rs1805888	0.92[JPT][hapmap]
rs1805894	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap]
rs1805901	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap]
rs1805902	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap]
rs1805907	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[JPT][hapmap]
rs1805911	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap]
rs1805912	1.00[CEU][hapmap];0.92[JPT][hapmap]
rs1805914	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap]
rs1805915	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap]
rs2074594	0.92[JPT][hapmap]
rs2074595	0.92[JPT][hapmap]
rs2280779	1.00[AFR][1000 genomes]
rs3026287	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[JPT][hapmap]
rs3358	0.91[JPT][hapmap]
rs3758145	1.00[CHB][hapmap];0.92[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6982611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7001425	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs769418	0.92[JPT][hapmap]
rs7813378	0.92[JPT][hapmap]
rs7818138	0.91[JPT][hapmap]
rs7818433	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7822786	0.92[JPT][hapmap]
rs7826471	0.92[JPT][hapmap]
rs7836381	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7844005	0.92[JPT][hapmap]
rs7845155	0.92[JPT][hapmap]
rs7845669	0.92[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758164	chr8:91000786-91329669	Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	esv2759628	chr8:91000786-91329669	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv2757281	chr8:91090821-91235335	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	esv34347	chr8:91101339-91179126	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
5	nsv470225	chr8:91113616-91229254	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
6	nsv891184	chr8:91114698-91222654	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
7	nsv824687	chr8:91144854-91177488	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
8	esv35109	chr8:91150726-91226940	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
9	nsv818643	chr8:91153308-91212148	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91163200-91176600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr8:91167400-91170600	Enhancers	HMEC	breast
3	chr8:91167600-91170400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:91168800-91172800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr8:91169000-91170000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:91169000-91171600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links