Variant report

Variant	rs1468078
Chromosome Location	chr8:90951930-90951931
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90913046..90917912-chr8:90949306..90952418,7	MCF-7	breast:
2	chr8:90951564..90953771-chr8:90956012..90958611,2	MCF-7	breast:
3	chr8:90951003..90953709-chr8:90966366..90969265,2	K562	blood:
4	chr8:90950728..90952538-chr8:90963276..90965322,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000207359	Chromatin interaction
ENSG00000164823	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10464867	0.92[JPT][hapmap]
rs10504884	0.92[JPT][hapmap]
rs13312921	0.84[JPT][hapmap]
rs13312954	0.84[JPT][hapmap]
rs13312971	0.92[JPT][hapmap];0.82[AMR][1000 genomes]
rs13312986	0.92[JPT][hapmap]
rs16893166	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16901695	0.92[JPT][hapmap]
rs16901941	0.83[JPT][hapmap]
rs1805811	0.84[JPT][hapmap]
rs1805824	0.84[JPT][hapmap]
rs1805826	0.83[JPT][hapmap]
rs1805837	0.84[JPT][hapmap]
rs2280779	0.83[JPT][hapmap]
rs3358	0.82[JPT][hapmap]
rs769418	0.83[JPT][hapmap]
rs7818138	0.82[JPT][hapmap]
rs7830738	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90915400-90966800	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr8:90915800-90995000	Weak transcription	Fetal Brain Male	brain
3	chr8:90916000-90961400	Weak transcription	Fetal Heart	heart
4	chr8:90916600-90969600	Weak transcription	Brain Substantia Nigra	brain
5	chr8:90917600-90953600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr8:90917600-90975400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr8:90924800-90986600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:90925400-90952000	Weak transcription	Fetal Intestine Small	intestine
9	chr8:90925400-90956600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:90925400-90970200	Weak transcription	Pancreas	Pancrea
11	chr8:90925400-90979200	Weak transcription	Gastric	stomach
12	chr8:90925600-90961600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:90925600-90967200	Weak transcription	Colonic Mucosa	Colon
14	chr8:90925600-90975200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr8:90927000-90978000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr8:90927200-90964200	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr8:90927600-90988400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr8:90927800-90963800	Weak transcription	NHEK	skin
19	chr8:90927800-90969800	Weak transcription	Esophagus	oesophagus
20	chr8:90927800-90970200	Weak transcription	Spleen	Spleen
21	chr8:90927800-90970400	Weak transcription	Right Ventricle	heart
22	chr8:90927800-90996000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr8:90928000-90965200	Weak transcription	Fetal Kidney	kidney
24	chr8:90928000-90970400	Weak transcription	Small Intestine	intestine
25	chr8:90929200-90961400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr8:90929400-90966000	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr8:90931600-90965200	Weak transcription	HepG2	liver
28	chr8:90932000-90952400	Weak transcription	NHLF	lung
29	chr8:90934000-90965400	Weak transcription	Fetal Brain Female	brain
30	chr8:90937200-90969800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr8:90937200-90970400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr8:90937200-90970400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr8:90937600-90952000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr8:90937600-90952000	Weak transcription	HSMMtube	muscle
35	chr8:90937600-90954600	Weak transcription	Brain Anterior Caudate	brain
36	chr8:90937600-90961200	Weak transcription	Psoas Muscle	Psoas
37	chr8:90937600-90969400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr8:90937600-90970000	Weak transcription	Lung	lung
39	chr8:90937800-90952000	Weak transcription	Aorta	Aorta
40	chr8:90937800-90953800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr8:90938200-90974600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr8:90938400-90970000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr8:90938800-90963000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr8:90939000-90964800	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr8:90941400-90952000	Weak transcription	Fetal Stomach	stomach
46	chr8:90941400-90970000	Weak transcription	Brain Germinal Matrix	brain
47	chr8:90942600-90977400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr8:90942600-90982600	Strong transcription	Primary monocytes fromperipheralblood	blood
49	chr8:90942800-90970000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr8:90943200-90955400	Strong transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links