Variant report

Variant	rs11986908
Chromosome Location	chr8:49609224-49609225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:49608956..49610986-chr8:49832225..49834769,3	MCF-7	breast:
2	chr8:49608793..49610522-chr8:49611390..49612978,2	MCF-7	breast:
3	chr8:49594955..49597165-chr8:49608675..49610341,2	MCF-7	breast:
4	chr8:49607677..49611181-chr8:49832645..49836098,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C8orf22-3	chr8:49609117-49609394	XLOC_006791

Variant related genes	Relation type
ENSG00000019549	Chromatin interaction

rs_ID	r²[population]
rs11987053	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11988057	1.00[AMR][1000 genomes]
rs11989489	1.00[AMR][1000 genomes]
rs11991072	1.00[AMR][1000 genomes]
rs11992534	1.00[AMR][1000 genomes]
rs11994806	1.00[AMR][1000 genomes]
rs11996439	1.00[AMR][1000 genomes]
rs11998047	1.00[AMR][1000 genomes]
rs6993027	1.00[AMR][1000 genomes]
rs7822994	1.00[AMR][1000 genomes]

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49595800-49616800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:49604200-49611400	Weak transcription	Fetal Brain Female	brain
3	chr8:49605600-49612000	Enhancers	NHEK	skin
4	chr8:49605600-49621000	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr8:49605600-49621800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:49605800-49611800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr8:49605800-49621200	Enhancers	HMEC	breast
8	chr8:49606600-49612000	Weak transcription	Pancreas	Pancrea
9	chr8:49606600-49612200	Weak transcription	Left Ventricle	heart
10	chr8:49607200-49611200	Weak transcription	Brain Germinal Matrix	brain
11	chr8:49608000-49611200	Weak transcription	Fetal Muscle Leg	muscle
12	chr8:49608200-49611600	Enhancers	Esophagus	oesophagus
13	chr8:49608200-49612400	Weak transcription	Adipose Nuclei	Adipose
14	chr8:49608600-49609400	Enhancers	Placenta Amnion	Placenta Amnion
15	chr8:49608600-49611200	Weak transcription	Primary hematopoietic stem cells	blood
16	chr8:49608600-49611200	Weak transcription	Fetal Lung	lung
17	chr8:49608800-49611200	Weak transcription	Placenta	Placenta
18	chr8:49608800-49611600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr8:49609000-49611200	Weak transcription	Fetal Thymus	thymus
20	chr8:49609200-49611200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr8:49609200-49611600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:49609200-49611800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr8:49609200-49612000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr8:49609200-49612000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr8:49609200-49621200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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