Variant report

Variant	rs11987550
Chromosome Location	chr8:87720350-87720351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11994555	1.00[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4961213	0.89[ASW][hapmap];0.81[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.81[LWK][hapmap];0.82[MEX][hapmap];0.90[MKK][hapmap];0.81[TSI][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4961214	0.81[CHB][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4961215	0.81[CHB][hapmap]
rs4961216	0.81[CHB][hapmap];1.00[CHD][hapmap]
rs58824862	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60237266	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66881636	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67190572	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67825168	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs68188370	0.81[EUR][1000 genomes]
rs6993111	1.00[ASN][1000 genomes]
rs72694154	0.81[EUR][1000 genomes]
rs73274804	0.85[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73274889	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73274899	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7812496	0.81[CHB][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7842904	0.81[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023510	chr8:87429001-87874948	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv891151	chr8:87690019-87776019	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1026794	chr8:87698639-87957840	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv539662	chr8:87698639-87957840	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:87716000-87721400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:87716000-87721600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:87717400-87721200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr8:87717600-87721600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:87718000-87721200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:87718000-87721600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr8:87719000-87721400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr8:87719000-87721400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr8:87719000-87721400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr8:87719800-87721200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:87720000-87721400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr8:87720000-87723400	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:87720000-87726600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr8:87720200-87721400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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