Variant report
| Variant | rs11994555 |
|---|---|
| Chromosome Location | chr8:87747472-87747473 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs10100818 | 0.81[ASN][1000 genomes] |
| rs11786561 | 0.81[ASN][1000 genomes] |
| rs11987550 | 1.00[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs11987618 | 0.83[ASN][1000 genomes] |
| rs12544789 | 0.83[ASN][1000 genomes] |
| rs12675704 | 0.81[ASN][1000 genomes] |
| rs12680558 | 0.83[ASN][1000 genomes] |
| rs16917366 | 0.81[ASN][1000 genomes] |
| rs16917385 | 0.81[ASN][1000 genomes] |
| rs17614056 | 0.83[ASN][1000 genomes] |
| rs4961213 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4961214 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4961215 | 0.83[ASN][1000 genomes] |
| rs4961216 | 0.83[ASN][1000 genomes] |
| rs58824862 | 1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs60237266 | 1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs61185462 | 0.81[ASN][1000 genomes] |
| rs61227753 | 0.81[ASN][1000 genomes] |
| rs66524243 | 0.81[ASN][1000 genomes] |
| rs66881636 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs67190572 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs67825168 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs68188370 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6993111 | 0.94[ASN][1000 genomes] |
| rs72694154 | 0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs73274804 | 0.94[ASN][1000 genomes] |
| rs73274889 | 1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs73274899 | 1.00[AMR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7812496 | 0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7825867 | 0.81[ASN][1000 genomes] |
| rs7842904 | 0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1023510 | chr8:87429001-87874948 | Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
| 2 | nsv891151 | chr8:87690019-87776019 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1026794 | chr8:87698639-87957840 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 4 | nsv539662 | chr8:87698639-87957840 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 5 | nsv817372 | chr8:87746712-88292389 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr8:87736800-87752400 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
